Limeseg Test Datasets

Image datasets from the publication : LimeSeg: A coarse-grained lipid membrane simulation for 3D image segmentation Vesicles.tif: spinning-disc confocal images of giant unilamellar vesicles HelaCell-FIBSEM.tif: a 3D Electron Microscopy (EM) dataset of nearly isotropic sections of a Hela cell, acquired with a focused ion beam scanning electron microscope (FIB-SEM). Sections are aligned with TrackEm2 (doi: ), without additional preprocessing. DrosophilaEggChamber.tif: point scanning confocal images of a Drosophila egg chamber. Channel 1: cell nuclei stained with DAPI. Channel 2: cell membranes visualized with fused membrane proteins Nrg::GFP and Bsg::GFP. Image metadata contains extra information including voxel sizes.

SystemX epiphysX funding.

Related Organizations

University of Geneva
Switzerland

Keywords

Cell membrane segmentation, Surfel-based, 3D segmentation, Point-cloud, EM, Cell volume, FIB-SEM, Cell surface, ImageJ

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