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Resource allocation in complex cell models

Authors: Dourado, Hugo; Goelzer, Anne; Grigaitis, Pranas; Liebermeister, Wolfram; Noor, Elad;

Resource allocation in complex cell models

Abstract

This is a chapter from the free textbook "Economic Principles in Cell Biology" Resource balance analysis models are cell models based on three basic constraints formulated at genome-scale: stationary fluxes (balancing production and consumption fluxes, uptake and excretion fluxes, as well as compound dilution by cell growth); flux coupling constraints relating fluxes to the amounts of catalyzing enzymes (or other machines); and density constraints, limiting molecule amounts in cell compartments, or molecule concentrations. These constraints narrow down the solution space predicted by FBA towards more physiological solutions. Large resource allocation models build on the same principles, and have been implemented as different variations (RBA models in a narrow sense, ME-models, and pc-models).

Country
France
Keywords

[SDV] Life Sciences [q-bio], Constraint, Cell model, Biomass, Cell model Resource allocation Constraint Biomass, Resource allocation

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This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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