Powered by OpenAIRE graph
Found an issue? Give us feedback
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODOarrow_drop_down
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Other literature type . 2024
License: CC BY
Data sources: ZENODO
ZENODO
Conference object . 2024
License: CC BY
Data sources: Datacite
ZENODO
Conference object . 2024
License: CC BY
Data sources: Datacite
versions View all 2 versions
addClaim

OpenEM: Open research data infrastructure for electron microscopy in Switzerland

Authors: Bliven, Spencer; Adamopoulou, Despoina; Laskina, Sofya; Minotti, Carlo; Nacsa, Attila; Tittes, Yves; Wiessner, David; +3 Authors

OpenEM: Open research data infrastructure for electron microscopy in Switzerland

Abstract

This poster was prepared for the 14th NOBUGS conference in Grenoble, France, from 23rd to 26th September 2024. Abstract The Open Electron Microscopy Data Network (OpenEM) is a Swiss-wide collaboration to improve data management at electron microscopy (EM) facilities and make the dissemination of EM data open and FAIR (findable, accessible, interoperable, and reusable). The collaboration is based around a central SciCat instance hosted at the Paul Scherrer Institute (discovery.psi.ch), which stores metadata from all facilities and provides data access and management to microscope users, facility managers, and the public. Electron microscopy has become an essential tool in structural biology and other fields, with modern microscopes producing above 10 TB per day. Managing these datasets is challenging for researchers and facilities producing the data. Making the data publicly accessible is also difficult due to limited integration of existing databases with the EM infrastructure, as well as a lack of repositories for all use cases. The OpenEM project aims to improve this by providing a central repository for all EM data and metadata from EM facilities in Switzerland. Metadata schemas are under development as part of the Open Science Community for EM, in cooperation with other community-driven ontologies such as PDBx/mmCIF, the EM Glossary, NXem, and the cryoEM ontology. Data is stored on tape at the Swiss National Supercomputing Centre (CSCS) or the ETHZ Long-Term Storage, from which it can be retrieved by collaborators and the public. Interoperability with other data repositories is a priority, particularly the EMDB and EMPIAR databases for macromolecular data. The OpenEM infrastructure aims to streamline the full data lifecycle for EM data, from data collection through publication and reuse.

Keywords

FAIR data, open research data, data catalog, Electron microscopy

  • BIP!
    Impact byBIP!
    selected citations
    These citations are derived from selected sources.
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    0
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Average
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Average
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Average
Powered by OpenAIRE graph
Found an issue? Give us feedback
selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average
Green