Figure 3. Trees obtained from the analvsis of 42 nuclear loci. Best tree found with ML analvses of the AA matrix under partitioned analvsis. Alternative support values are given for deep nodes: values at nodes indicate ultra-fast bootstrap values obtained under the partitioned analvsis/the non-partitioned analvsis under the best-fiưing model (Q.plant*F*I*º4)/the C50 model/posterior probabilities under the CAT model of PHYLOBAYES. When a '*' is indicated instead of a support value it means that the nodes was not retrieved in the corresponding analvsis or that support was below 50.

Published as part of Jousselin, Emmanuelle, Coeur, Armelle, Clamens, Anne-Laure, Galan, Maxime, Cruaud, Corinne, Barbe, Valérie & Manzano-Marín, Alejandro, 2024, Discordance between mitochondrial, nuclear, and svmbiont genomes in aphid phvlogenetics: who is telling the truth?, pp. 1-18 in Zoological Journal of the Linnean Society 201 on page 9, DOI: 10.1093/zoolinnean/zlae098, http://zenodo.org/record/13784557