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ZENODO
Dataset . 2004
License: CC 0
Data sources: Datacite
ZENODO
Dataset . 2024
License: CC 0
Data sources: Datacite
ZENODO
Dataset . 2024
License: CC 0
Data sources: Datacite
ZENODO
Dataset . 2024
License: CC 0
Data sources: Datacite
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modelforge curated dataset: OpenFF PhAlkEthOH Dataset

Authors: Iacovella, Christopher; Gokey, Trevor; Wieder, Marcus; Chodera, John;

modelforge curated dataset: OpenFF PhAlkEthOH Dataset

Abstract

Curated OpenFF PhAlkEthOH Dataset: Minimized full dataset, version "nc_1000_min_v1": This provides a curated hdf5 file for a subset of the OpenFF PhAlkEthOH dataset designed to be compatible with modelforge, an infrastructure to implement and train NNPs. This dataset contains 1000 total conformers for 1000 unique molecules; only the final energy minimized configuration is included per molecule. This excludes any configurations where the magnitude of the forces on the atoms are greater than 1 hartree/bohr. When applicable, the units of properties are provided in the datafile, encoded as strings compatible with the openff-units package. For more information about the structure of the data file, please see the following: https://github.com/choderalab/modelforge/wiki/Dataset-and-curation#curation-module This curated dataset was generated using the modelforge software at commit : Link to the source code at this commit: Link to the script file used to generate the dataset: Source Dataset: PhAlkEthOH: Phenyls, Alkanes, Ethers, and alcohols (OH) The PhAlkEthOH dataset contains a collection of optimized geometries of linear and cyclic molecules containing phyl rings, small alkanes, ethers, and alcohols containing only elements carbon, oxygen and hydrogen. For each unique molecule, conformers correspond to snapshots from the optimization trajectory. All QM datapoints retrieved from The MolSSI qcarchive and were generated using B3LYP-D3BJ/DZVP level of theory, the default theory used for force field development by the Open Force Field Initiative. Citations: Related manuscripts: Bannan CC, Mobley D. ChemPer: An Open Source Tool for Automatically Generating SMIRKS Patterns. ChemRxiv. 2019; doi:10.26434/chemrxiv.8304578.v1 Wang Y, Fass J, Kaminow B, Herr JE, Rufa D, Zhang I, Pulido I, Henry M, Macdonald HE, Takaba K, Chodera JD. End-to-end differentiable construction of molecular mechanics force fields. Chemical Science. 2022;13(41):12016-33. doi:10.1039/d2sc02739a Source dataset: Gokey, T,., "OpenFF Sandbox CHO PhAlkEthOH v1.0", 2020, https://github.com/openforcefield/qca-dataset-submission/tree/master/submissions/2020-09-18-OpenFF-Sandbox-CHO-PhAlkEthOH

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average