This study investigates the biogeochemical processes controlling greenhouse gas (GHG) emissions from soils at Ghazi University DGK and Khawaja Fareed University of Engineering and Information Technology (KFUEIT) using a multi-omics approach. Key environmental factors, including solar radiation, water usage, and soil properties, were analyzed to determine their impact on GHG emissions. The results reveal that higher solar radiation levels significantly increase soil temperatures, enhancing microbial activity and GHG emissions. Drip irrigation practices were found to elevate soil moisture content, further boosting emissions, while organic amendments, crop rotation, and cover cropping effectively reduced emissions by improving soil health. These findings provide valuable insights into optimizing agricultural practices for GHG mitigation, although the study's short-term focus and specific site conditions highlight the need for further research on long-term effects and broader applicability.