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Elixir-Excelerate: Deliverable 6.2: Report On Comprehensive Metagenomic Data Standards Environment

Authors: Cochrane, Guy; Finn, Rob; Willassen, Nils Peder; Bongo, Lars Ailo; Santamaria, Monica; Fosso, Bruno; Pelletier, Eric; +3 Authors

Elixir-Excelerate: Deliverable 6.2: Report On Comprehensive Metagenomic Data Standards Environment

Abstract

We have previously reviewed data standards and best practices in marine metagenomics and have published our review and three core recommendations (ten Hoopen et al., 2017). On our first recommendation - that scientists comply with data standards and recommended best practices, we assess in this Annex the status across sampling, sequencing, analysis and results archiving stages of metagenomics studies. We report for our second recommendation - that computational analysis process be described formally, our progress through collaborative work with the Interoperability platform on adopting the Common Workflow Language (CWL) We describe that in response to our third recommendation - that the results of computational metabarcoding and metagenomics analysis processes be archived.

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Keywords

marine metagenomics, bioinformatics, data standards, interoperability, molecular data

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selected citations
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This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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