Code and data to reproduce the analysis presented in: Page GFM, Liénard JF, Pruett MJ, Moffett KB (2018). Spatiotemporal dynamics of leaf transpiration quantified with time-series thermal imaging. Agricultural and Forest Meteorology, DOI: 10.1016/j.agrformet.2018.02.023 Code and data is organized as follows: leaf area measurement code along with scanned data is in directory ./data/leaf_scans/ [Matlab] thermal/color imagery registration code is in directory ./registration/ [Python] transient leaf energy balance model implimented for both average leaf temperature and pixel-scale data is in ./model/ [R] all data is in directory ./data/ [*.csv] An active repository of this project is maintained on Github.