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Data and code for the study "Palliocystidium, a new genus in the family Hydnodontaceae (Trechisporales)"

Authors: Ordynets, Alexander; Gruhn, Gérald;

Data and code for the study "Palliocystidium, a new genus in the family Hydnodontaceae (Trechisporales)"

Abstract

This is a collection of data used in our study "Palliocystidium, a new genus in the family Hydnodontaceae (Trechisporales)". Background and aims – During fieldwork in French Guiana in 2018, two fungal specimens resembling the outstanding member of the genus Subulicystidium, viz. S. oberwinkleri, were collected. This study aims to clarify species- and genus-level assignment of this material from French Guiana and S. oberwinkleri. Material and methods – Corticioid fruiting bodies and spore prints were examined and measured under a light microscope. DNA sequences of the two nuclear ribosomal regions were used for Maximum likelihood and Bayesian phylogenetic analyses: (i) large subunit-coding DNA and (ii) internal transcribed spacer. Furthermore, guanine-cytosine content of the DNA region was calculated for (i), and UNITE Species Hypotheses Matching Analysis was performed for newly generated sequences of (ii). R code (as R Markdown files), input data and results of analyses (tables, tree files and publication-ready figures) are organized as R project. To reproduce analyses, unpack the archive, navigate to the root directory, launch the R project via opening .Rproj file. as well as R markdown files for particular analysis steps.

The director of Forêt et Risques Naturels of the French forestry office (ONF-DRFRN), and Paris French Museum (Patrinat) are acknowledged for funding the field trip.

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Keywords

guanine-cytosine content, morphometric analysis, phylogenetic analysis, Species Hypothesis matching, 28S nc rDNA, nuclear ribosomal DNA, ITS nc rDNA

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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