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LiDAR reveals a preference for intermediate visibility by a forest-dwelling ungulate species: Code and LiDAR data

Authors: Zong, Xin; Wang, Tiejun; Skidmore, Andrew; Heurich, Marco;

LiDAR reveals a preference for intermediate visibility by a forest-dwelling ungulate species: Code and LiDAR data

Abstract

Visibility (viewshed) plays a significant and diverse role in animals’ behavior and fitness. Understanding how visibility influences animal behavior requires the measurement of habitat visibility at spatial scales commensurate to individual animal choices. However, measuring habitat visibility at a fine spatial scale over a landscape is a challenge, particularly in highly heterogeneous landscapes (e.g., forests). As a result, our ability to model the influence of fine-scale visibility on animal behavior has been impeded or limited. In this study, we demonstrate the application of the concept of 3D cumulative viewshed in the study of animal spatial behavior at a landscape level. Specifically, we employed a newly described approach that combines terrestrial and airborne LiDAR to measure fine-scale habitat visibility (3D cumulative viewshed) on a continuous scale in forested landscapes. We applied the LiDAR-derived visibility to investigate how visibility in forests affects the summer habitat selection and the movement of 20 GPS-collared female red deer Cervus elaphus in a temperate forest in Germany. We used integrated step selection analysis to determine whether red deer show any preference for fine-scale habitat visibility and whether visibility is related to the rate of movement of red deer. We found that red deer selected intermediate habitat visibility. Their preferred level of visibility during the day was substantially lower than that of night and twilight, whereas the preference was not significantly different between night and twilight. In addition, red deer moved faster in high-visibility areas, possibly mainly to avoid predation and anthropogenic risk. Furthermore, red deer moved most rapidly between locations in the twilight. For the first time, the preference for intermediate habitat visibility and the adaption of movement rate to fine-scale visibility by a forest-dwelling ungulate species at a landscape scale was revealed. The LiDAR technique used in this study offers fine-scale habitat visibility at the landscape level in forest ecosystems, which would be of broader interest in the fields of animal ecology and behavior.

The datasets are used for demonstrating the method to generate the fine-scale LiDAR-based visibility, which is elaborated in the paper "LiDAR reveals a preference for intermediate visibility by a forest-dwelling ungulate species". The detailed specifications of these datasets are described in the README file. The R and C++ codes implementing this method are also attached. The detailed steps as to the usage of these code scripts are described in the README file contained in 3DViewshed codes.rar. 

Please see detailed description as to how these data were colleced and processed in the paper "LiDAR reveals a preference for intermediate visibility by a forest-dwelling ungulate species".

Country
Netherlands
Related Organizations
Keywords

viewshed, red deer, FOS: Animal and dairy science, habitat selection, integrated Step Selection Analysis, Fine-scale visibility, Movement rate

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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
views
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