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ZENODO
Dataset . 2017
License: CC 0
Data sources: ZENODO
DRYAD
Dataset . 2017
License: CC 0
Data sources: Datacite
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Data from: A phylogenetic analysis of macroevolutionary patterns in fermentative yeasts

Authors: Paleo-López, Rocío; Quintero-Galvis, Julian Fernando; Solano-Iguaran, Jaiber J.; Sanchez-Salazar, Angela M.; Gaitán-Espitia, Juan Diego; Nespolo, Roberto F.; Gaitan-Espitia, Juan D.;

Data from: A phylogenetic analysis of macroevolutionary patterns in fermentative yeasts

Abstract

When novel sources of ecological opportunity are available, physiological innovations can trigger adaptive radiations. This could be the case of yeasts (Saccharomycotina), in which an evolutionary novelty is represented by the capacity to exploit simple sugars from fruits (fermentation). During adaptive radiations, diversification and morphological evolution are predicted to slow-down after early bursts of diversification. Here, we performed the first comparative phylogenetic analysis in yeasts, testing the “early burst” prediction on species diversification and also on traits of putative ecological relevance (cell-size and fermentation versatility). We found that speciation rates are constant during the time-range we considered (ca., 150 millions of years). Phylogenetic signal of both traits was significant (but lower for cell-size), suggesting that lineages resemble each other in trait-values. Disparity analysis suggested accelerated evolution (diversification in trait values above Brownian Motion expectations) in cell-size. We also found a significant phylogenetic regression between cell-size and fermentation versatility (R2 = 0.10), which suggests correlated evolution between both traits. Overall, our results do not support the early burst prediction both in species and traits, but suggest a number of interesting evolutionary patterns, that warrant further exploration. For instance, we show that the Whole Genomic Duplication that affected a whole clade of yeasts, does not seems to have a statistically detectable phenotypic effect at our level of analysis. In this regard, further studies of fermentation under common-garden conditions combined with comparative analyses are warranted.

kurtzToR-2Dataset compiled from Kurtzman et al., 2011 to cell size and fermentation versatility (maximum number of sug- 29 ars a species can ferment) in yeasts.yeast-phylogenyTime-callibrating phylogeny, modified from Kurtzman and Robnett 2003; with actualized species names according to Kurtzman et al. 2011).

Keywords

Zygotorulaspora mrakii, Tetrapisispora phaffii, Kazachstania africana, Candida glabrata, Lachancea fermentati, Lachancea thermotolerans, Kloeckera lindneri, Saccharomyces paradoxus, Kazachstania viticola, Lachancea cidri, Kluyveromyces marxianus, Naumovozyma dairenensis, Kluyveromyces nonfermentans, fermentation, Tetrapisispora blattae, Vanderwaltozyma yarrowii, comparative method, Eremothecium coryli, Kluyveromyces aestuarii, Kluyveromyces lactis, Zygotorulaspora florentina, Zygosaccharomyces kombuchaensis, Zygosaccharomyces rouxii, Kazachstania barnettii, Kazachstania sinensis, Schizosaccharomyces pombe, Hanseniaspora osmophila, Candida castellii, Saccharomyces kudriavzevii, Hanseniaspora guilliermondii, Candida humilis, Kazachstania piceae, Lachancea kluyveri, Eremothecium gossypii, Tetrapisispora iriomotensis, Saccharomyces cariocanus, Saccharomicotina, Torulaspora globosa, Saccharomycodes ludwigii, Torulaspora delbrueckii, Hanseniaspora uvarum, Kazachstania spencerorum, Nakaseomyces delphensis, Kazachstania kunashirensis, Torulaspora microellipsoides, Naumovozyma castellii, Wickerhamomyces anomalus, Lachancea waltii, Tetrapisispora arboricola, Zygosaccharomyces bisporus, Hanseniaspora occidentalis, Zygosaccharomyces bailii, Zygosaccharomyces mellis, Eremothecium ashbyi, Saccharomyces pastorianus, Eremothecium cymbalariae, Saccharomyces mikatae, Hanseniaspora valbyensis, Hanseniaspora vineae, Kluyveromyces dobzhanskii, Torulaspora pretoriensis, Kazachstania servazzii, Saccharomyces bayanus, Kazachstania rosinii, Tetrapisispora nanseiensis, Kazachstania exigua, Vanderwaltozyma polyspora, Kazachstania bulderi, Nakaseomyces bacillisporus, Zygosaccharomyces lentus, Kazachstania transvaalensis, Fermentation, Kazachstania lodderae, Torulaspora franciscae, Kazachstania telluris, Eremothecium sinecaudum, Kazachstania unispora, Kazachstania martiniae, Kluyveromyces wickerhamii, Kazachstania turicensis

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selected citations
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This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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