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pmid: 10846155
HIV-1 sequences were analyzed to estimate the timing of the ancestral sequence of the main group of HIV-1, the strains responsible for the AIDS pandemic. Using parallel supercomputers and assuming a constant rate of evolution, we applied maximum-likelihood phylogenetic methods to unprecedented amounts of data for this calculation. We validated our approach by correctly estimating the timing of two historically documented points. Using a comprehensive full-length envelope sequence alignment, we estimated the date of the last common ancestor of the main group of HIV-1 to be 1931 (1915–41). Analysis of a gag gene alignment, subregions of envelope including additional sequences, and a method that relaxed the assumption of a strict molecular clock also supported these results.
Acquired Immunodeficiency Syndrome, Likelihood Functions, Time Factors, Pan troglodytes, Simian Acquired Immunodeficiency Syndrome, Genes, env, Haiti, United States, Disease Outbreaks, HIV Envelope Protein gp160, Europe, Evolution, Molecular, Africa, Consensus Sequence, Confidence Intervals, HIV-1, Animals, Humans, Simian Immunodeficiency Virus, Phylogeny
Acquired Immunodeficiency Syndrome, Likelihood Functions, Time Factors, Pan troglodytes, Simian Acquired Immunodeficiency Syndrome, Genes, env, Haiti, United States, Disease Outbreaks, HIV Envelope Protein gp160, Europe, Evolution, Molecular, Africa, Consensus Sequence, Confidence Intervals, HIV-1, Animals, Humans, Simian Immunodeficiency Virus, Phylogeny
| selected citations These citations are derived from selected sources. This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically). | 788 | |
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