AbstractTo better understand the relationship between biodiversity and ecosystem functioning, it is increasingly accepted that the focus of study needs to shift from taxonomic identity to the diversity of functional traits displayed by species within a community. Such an approach allows species to be grouped according to particular functional characteristics. Increasingly viewed as an extremely important group of model organisms, hoverflies have been the focus of a variety of ecological studies. Based on data regarding selected functional traits of hoverflies registered in Southeast Europe, the main aims of our study were to define hoverfly functional groups according to the similarity of these traits, as well as to compare the representation of delineated hoverfly functional groups among these vegetation types. We used fuzzy clustering to classify 568 SE European hoverfly species into five functional groups. The principle trait separating these functional groups was larval feeding type, followed by size of species range, flight ability, number of generations, inundation tolerance, and tolerance to human impact. For 9 of 11 vegetation types, the dominant functional group was characterized by species with good flight ability, having high human impact tolerance and more annual generations. The remaining two vegetation types, South‐west Balkan sub‐Mediterranean mixed oak forests and Mediterranean mixed forests, showed disparate dominance patterns, indicating that richness of functional groups is dependent on vegetation. Further investigation of whether and how established conservation measures enable recovery of the functional richness affected by habitat disturbance would help elucidate the importance of functional diversity in preserving biodiversity.