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Genome sequence and functional genomic analysis of the oil-degrading bacterium Oleispira antarctica

Authors: Kube Michael; Chernikova Tatyana N; AlRamahi Yamal; Beloqui Ana; LopezCortez Nieves; Guazzaroni MariaEugenia; Heipieper Hermann J; +29 Authors

Genome sequence and functional genomic analysis of the oil-degrading bacterium Oleispira antarctica

Abstract

Ubiquitous bacteria from the genus Oleispira drive oil degradation in the largest environment on Earth, the cold and deep sea. Here we report the genome sequence of Oleispira antarctica and show that compared with Alcanivorax borkumensis--the paradigm of mesophilic hydrocarbonoclastic bacteria--O. antarctica has a larger genome that has witnessed massive gene-transfer events. We identify an array of alkane monooxygenases, osmoprotectants, siderophores and micronutrient-scavenging pathways. We also show that at low temperatures, the main protein-folding machine Cpn60 functions as a single heptameric barrel that uses larger proteins as substrates compared with the classical double-barrel structure observed at higher temperatures. With 11 protein crystal structures, we further report the largest set of structures from one psychrotolerant organism. The most common structural feature is an increased content of surface-exposed negatively charged residues compared to their mesophilic counterparts. Our findings are relevant in the context of microbial cold-adaptation mechanisms and the development of strategies for oil-spill mitigation in cold environments.

Countries
Germany, Italy
Keywords

Protein Folding, Salinity, Gene Transfer, Horizontal, Molecular Sequence Data, Industrial Oils, Alcanivoraceae, Article, Microbial ecology, Bacterial Proteins, Genome Size, Bacterial genetics, Amino Acid Sequence, Phylogeny, Comparative genomics, Chromosome Mapping, Functional genomics, Sequence Analysis, DNA, Adaptation, Physiological, Cold Temperature, Biodegradation, Environmental, Genome sequence, Oleispira antarctica, Gammaproteobacteria, Genome, Bacterial, Molecular Chaperones

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
views
OpenAIRE UsageCountsViews provided by UsageCounts
downloads
OpenAIRE UsageCountsDownloads provided by UsageCounts
134
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Top 10%
Top 1%
66
82
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gold