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Explore Bristol Research
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Design and Nuclear Magnetic Resonance (NMR) Structure Determination of the Second Extracellular Immunoglobulin Tyrosine Kinase A (TrkAIg2) Domain Construct for Binding Site Elucidation in Drug Discovery

Authors: Shoemark, Deborah K; Williams, Christopher; Fahey, Mark S; Watson, Judy J; Tyler, Sue J; Scoltock, Simon J; Ellis, Rosamund; +10 Authors
APC: 3,257.59 EUR

Design and Nuclear Magnetic Resonance (NMR) Structure Determination of the Second Extracellular Immunoglobulin Tyrosine Kinase A (TrkAIg2) Domain Construct for Binding Site Elucidation in Drug Discovery

Abstract

The tyrosine kinase A (TrkA) receptor is a validated therapeutic intervention point for a wide range of conditions. TrkA activation by nerve growth factor (NGF) binding the second extracellular immunoglobulin (TrkAIg2) domain triggers intracellular signaling cascades. In the periphery, this promotes the pain phenotype and, in the brain, cell survival or differentiation. Reproducible structural information and detailed validation of protein-ligand interactions aid drug discovery. However, the isolated TrkAIg2 domain crystallizes as a β-strand-swapped dimer in the absence of NGF, occluding the binding surface. Here we report the design and structural validation by nuclear magnetic resonance spectroscopy of the first stable, biologically active construct of the TrkAIg2 domain for binding site confirmation. Our structure closely mimics the wild-type fold of TrkAIg2 in complex with NGF ( 1WWW .pdb), and the (1)H-(15)N correlation spectra confirm that both NGF and a competing small molecule interact at the known binding interface in solution.

Country
United Kingdom
Related Organizations
Keywords

570, Magnetic Resonance Spectroscopy, Amitriptyline, drug discovery, Structure-Activity Relationship, name=Cerebrovascular and Dementia Research Group, Drug Discovery, Nerve Growth Factor, /dk/atira/pure/core/keywords/bcs_tecs_cdts, pain, Receptor, trkA, TrkAIg2, /dk/atira/pure/core/keywords/bcs_tecs_cdts; name=BCS and TECS CDTs, Binding Sites, TrkA, NMR construct, Recombinant Proteins, /dk/atira/pure/core/keywords/faculty_of_enigneering/school_of_chemistry/organic_biological; name=Organic & Biological, Protein Structure, Tertiary, /dk/atira/pure/core/keywords/dementia_research_group; name=Cerebrovascular and Dementia Research Group, Drug Design, TrkA, TrkAIg2, drug discovery, NMR construct, pain, Alzheimer’s, name=BCS and TECS CDTs, /dk/atira/pure/core/keywords/dementia_research_group, Alzheimer’s

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    popularity
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    influence
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
11
Top 10%
Average
Average
Green
hybrid