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Article . 2023 . Peer-reviewed
License: CC BY
Data sources: Crossref
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Article . 2023
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https://doi.org/10.1101/2023.0...
Article . 2023 . Peer-reviewed
Data sources: Crossref
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Genome assembly of the hybrid grapevine Vitis ‘Chambourcin’

Authors: Sagar Patel; Zachary N. Harris; Jason P. Londo; Allison Miller; Anne Fennell;

Genome assembly of the hybrid grapevine Vitis ‘Chambourcin’

Abstract

‘Chambourcin’ is a French-American interspecific hybrid grape grown in the eastern and midwestern United States and used for making wine. Few genomic resources are available for hybrid grapevines like ‘Chambourcin’. Here, we assembled the genome of ‘Chambourcin’ using PacBio HiFi long-read, Bionano optical map, and Illumina short-read sequencing technologies. We generated an assembly for ‘Chambourcin’ with 26 scaffolds, with an N50 length of 23.3 Mb and an estimated BUSCO completeness of 97.9%. We predicted 33,791 gene models and identified 16,056 common orthologs between ‘Chambourcin’, V. vinifera ‘PN40024’ 12X.v2, VCOST.v3, Shine Muscat and V. riparia Gloire. We found 1,606 plant transcription factors from 58 gene families. Finally, we identified 304,571 simple sequence repeats (up to six base pairs long). Our work provides the genome assembly, annotation and the protein and coding sequences of ‘Chambourcin’. Our genome assembly is a valuable resource for genome comparisons, functional genomic analyses and genome-assisted breeding research.

Keywords

Data Release, Electronic computers. Computer science, QA75.5-76.95

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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
3
Top 10%
Average
Average
Green
gold