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Nine-amino-acid transactivation domain: Establishment and prediction utilities

Authors: Martin Piskacek; Martin Piskacek; Martin Grabner; Martin Gregor; Simona Piskacek; Maria Nemethova; Pavel Kovarik;

Nine-amino-acid transactivation domain: Establishment and prediction utilities

Abstract

Here we describe the establishment and prediction utilities for a novel nine-amino-acid transactivation domain, 9aa TAD, that is common to the transactivation domains of a large number of yeast and animal transcription factors. We show that the 9aa TAD motif is required for the function of the transactivation domain of Gal4 and the related transcription factors Oaf1 and Pip2. The 9aa TAD possesses an autonomous transactivation activity in yeast and mammalian cells. Using sequence alignment and experimental data we derived a pattern that can be used for 9aa TAD prediction. The pattern allows the identification of 9aa TAD in other Gal4 family members or unrelated yeast, animal, and viral transcription factors. Thus, the 9aa TAD represents the smallest known denominator for a broad range of transcription factors. The wide occurrence of the 9aa TAD suggests that this domain mediates conserved interactions with general transcriptional cofactors. A computational search for the 9aa TAD is available online from National EMBnet-Node Austria at http://www.at.embnet.org/toolbox/9aatad/.

Keywords

Transcriptional Activation, Saccharomyces cerevisiae Proteins, Transactivation domain, Sequence Homology, Amino Acid, Recombinant Fusion Proteins, 106002 Biochemie, Molecular Sequence Data, 106002 Biochemistry, 106023 Molecular biology, Protein Structure, Tertiary, DNA-Binding Proteins, 301902 Immunologie, 106023 Molekularbiologie, Two-Hybrid System Techniques, Genetics, Animals, Amino Acid Sequence, Transcription factor, Transcription, 301902 Immunology, Transcription Factors

  • BIP!
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    citations
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    134
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Top 1%
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Top 10%
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Top 10%
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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
134
Top 1%
Top 10%
Top 10%
gold