We consider three a priori totally different setups for Hopf algebras from number theory, mathematical physics and algebraic topology. These are the Hopf algebra of Goncharov for multiple zeta values, that of Connes-Kreimer for renormalization, and a Hopf algebra constructed by Baues to study double loop spaces. We show that these examples can be successively unified by considering simplicial objects, co-operads with multiplication and Feynman categories at the ultimate level. These considerations open the door to new constructions and reinterpretations of known constructions in a large common framework which is presented step-by-step with examples throughout. In this second part of two papers, we give the general categorical formulation.

This is the second part of the final version of arXiv 1607.00196. The first part is available as the replacement of arXiv 1607.00196