Throughout their annual cycle, migrants often adopt different foraging and microhabitat usage strategies. Previous studies treat migrants as niche-trackers/niche-followers, i.e., they track similar niches along their annual cycle, almost exclusively based on food resource availability, which is inferred based on the climate at either the wintering or breeding grounds. An alternative approach is the use of such techniques as stable isotope analyses that allow researchers to more directly infer a migrant’s niche across seasons. While the use of carbon isotopes enables an assessment of microhabitat traits, that of nitrogen isotopes provides information on a bird’s trophic level. In the study reported here, we performed comparative analyses of stable carbon and nitrogen isotope ratios in tissues of the resident Plain-crested Elaenia and the intratropical migrant Lesser Elaenia to evaluate their year-round ecological niches. Our data suggest that both residents and migrants were consistent in their use of similar microhabitats throughout the year, which indicates a niche-tracking behavior on the part of migratory individuals. Migrants often fed at higher trophic levels than residents, but both species exhibited similar trophic level shifts through the year, feeding on higher trophic levels during breeding and on the lowest ones while wintering. The observed patterns could be due to several factors, including differential energetic demand needed for the migratory journey, species-specific nutritional needs during each stage of the year, and/or the use of multiple wintering grounds by migrants.