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Mammalian Genome
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Mammalian Genome
Article . 1999 . Peer-reviewed
License: Springer TDM
Data sources: Crossref
Mammalian Genome
Article . 1999
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Genomic structure and chromosomal mapping of the mouse transcription factor TEF-5 (Tead3) gene

Authors: Jacquemin, Patrick; Martial, Joseph A.; Davidson, Irwin; Chen, Zhi;

Genomic structure and chromosomal mapping of the mouse transcription factor TEF-5 (Tead3) gene

Abstract

Four members of the Transcriptional Enhancer Factor (TEF) family of transcription factors have been identified in human and mouse (TEF-1, TEF-3, TEF-4, and TEF-5; approved gene symbols TEAD1, TEAD4, TEAD2, and TEAD3 respectively; Yasunami et al. 1995, 1996; Jacquemin et al. 1996, 1997; Yockey et al. 1996; Hsu et al. 1996; Kaneko et al. 1997; reviewed in Jacquemin and Davidson 1997). These factors possess the TEA DNA binding domain which recognizes degenerate sites in the enhancers and promoters of several viral and cellular genes. The TEFs comprise a short variable N-terminal region preceding the highly conserved TEA domain, a variable hydrophobic region immediately after the TEA domain, and a large, well-conserved C-terminal domain (see Fig. 1A). Expression of the murine (m)Tead factors is differentially regulated during development, the principal sites of expression being mitotic neuroblasts, skeletal and cardiac muscle, the placenta, lung, and several other viscera (see Jacquemin and Davidson 1997). Insertional mutagenesis showed that Tead1 is essential for cardiac development (Chen et al. 1994). Tead3 is first expressed in extraembryonic tissues such as the giant trophoblastic cells, and expression persists in the giant cells and labyrinthine region of the placenta throughout gestation (Jacquemin et al. 1998). Tead3 expression is limited to the extraembryonic layers until around 9.5 days post coitum, when further expression in epithelia and developing viscera is also observed. As gene targeting experiments will be required to further define the role of Tead3 in placental development, we report here as a first step the isolation and characterization of the Tead3 gene and the determination of its chromosomal location. A lEMBL3 mouse genomic DNA library (kindly provided by J.-M. Garnier) was screened with a mix of the cDNAs encoding the Tead1, -2, -3 and -4 TEA domains as probes. After isolation, phages containing Tead3 were identified by PCR using Tead3specific primers, and their DNA was analyzed by Southern blotting with the full-length Tead3 cDNA. Following digestion with PvuII, 4 hybridizing fragments ranging from 1.1 to 3.2 kb were cloned. These fragments were entirely sequenced and comparison with the Tead3 cDNA allowed identification of the introns and exons. Junctions between the fragments, and sequences upstream and downstream of the coding region were obtained by direct sequencing on the phage DNA. A total sequence of 12,622 base pairs (bp) was obtained. Analysis of this sequence indicates that the Tead3 gene comprises 13 exons (the smallest is 12 bp) and 12 introns (from 91 bp to 3582 bp; Fig. 1A). All of the intron-exon junctions conform with the GT/AG rule. The TEA DBD is encoded by three exons (II–IVA), each coding for one of the three putative a-helices. In chicken (c) two Tead3 isoforms have been characterized with differences in the C-terminal a-helix of the TEA DBD encoded by exon IV. These isoforms may be generated by differential use of a duplication of this exon. Indeed, downstream of exon IVA, we found a variant copy of this exon (IVB, Fig. 1B). So far only exon IVA has been found in mammalian Tead3 cDNAs. In contrast, in TEAD1, only exon IVB has been found (Fig. 1B). However, in one exceptional case a TEAD1 cDNA from HeLa cells that we characterized previously contained a duplicated region at the end of the TEA domain corresponding to a splice variant in which both exons IVA and IVB were present (our unpublished data and see Fig. 1B). This TEAD1 variant was still able to specifically bind DNA in electrophoretic mobility shift assays (our unpublished data). Alternative splicing of the four amino acids encoded by exon V was also observed. This exon was present in all the isolated mouse or human TEAD3 cDNAs, but was variable in TEAD1. Comparison of the Tead3 locus with that of Tead2 (Suzuki et al. 1996) showed that the overall organization of the genes is conserved. The location of the intron-exon junctions for Tead3 relative to the peptide sequence is shown in Fig. 2A. All the junctions are in analogous position to those of Tead2 with the exception of the upstream and downstream borders of exon VII. A comparison of the exon VII frontiers for Tead2 and -3 is shown in Fig. 2B. This exon encodes part of the most variable region of the TEAD family. We further determined the chromosomal localization of Tead3, using an interspecific backcross DNA panel (The Jackson Laboratory; Bar Harbor, Me; Rowe et al. 1994). The panel was generated by using DNA from 94 backcross animals from the reciprocal cross (C57BL/6JEi × SPRET/Ei)F1 × SPRET/Ei (“Jackson BSS” backcross panel). Southern blot analysis with a Tead3 cDNA probe detected a restriction fragment length variation (RFLV) between DNAs of the C57BL/6J and M. spretus. The probe detected a 2-kb BamHI fragment in C57BL/6 DNA and a 5-kb fragment in M. spretus DNA (data not shown). Therefore, the RFLV identified was used to follow the segregation of the Tead3 locus in the Jackson BSS backcross panel. The resulting data show that Tead3 is 1.1 centimorgans (cM) distal to the D17WSU92e locus, 2.1 cM and 3.2 cM proximal to the Tff3 (intestinal trefoil factor 3) or D17Mit16 locus respectively, near the proximal end of Chr 17 (Fig. 3). The Fkbp5 gene (FK506 binding protein 5) is also present in this region of Chr 17. In fact, Tead3 co-segregates with Fkbp5 gene in all 94 animals. Thus, we *Present address: Unite HORM, UCL-ICP, 75 Av. Hippocrate, B-1200 Bruxelles, Belgique.

Country
United States
Keywords

Science, Ecology and Evolutionary Biology, Molecular Sequence Data, Natural Resources and Environment, Molecular, Chromosome Mapping, TEA Domain Transcription Factors, Mice, Inbred Strains, DNA-Binding Proteins, Mice, Inbred C57BL, Alternative Splicing, Mice, Legacy, Health Sciences, Animals, Amino Acid Sequence, Cellular and Developmental Biology, Transcription Factors

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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
3
Average
Average
Average
bronze