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The Expansion of the TRB and TRG Genes in Domestic Goats (Capra hircus) is Characteristic of the Ruminant Species

Authors: Giannico, Francesco; Massari, Serafina; Caputi Jambrenghi, Anna; Soriano, Adriano; Pala, Angela; Linguiti, Giovanna; Ciccarese, Salvatrice; +1 Authors

The Expansion of the TRB and TRG Genes in Domestic Goats (Capra hircus) is Characteristic of the Ruminant Species

Abstract

Abstract Background: Goats (Capra hircus), one of the first domesticated species, are economically important for milk and meat production, and their broad geographical distribution reflects their successful adaptation to diverse environmental conditions. Despite the relevance of this species, the genetic research on the goat traits is limited compared to other domestic species. Thanks to the latest goat reference genomic sequence (ARS1), which is considered to be one of the most continuous assemblies in livestock, we deduced the genomic structure of the T cell receptor beta (TRB) and gamma (TRG) loci in this ruminant species. Results: Our analyses revealed that although the organization of the goat TRB locus is broadly similar to that of the other artiodactyl species, with three in tandem D-J-C clusters located at the 3’ end, a complex and extensive series of duplications have occurred in the V genes at the 5’ end, leading to a marked expansion in the number of the TRBV genes. This phenomenon appears to be a feature of the ruminant lineage since similar gene expansions have also occurred in sheep and cattle.Likewise, the general organization of the goat TRG genes is typical of ruminant species studied so far, with two paralogous TRG loci, TRG1 and TRG2, located in two distinct and distant positions on the same chromosome as result of a split in the ancestral locus. Each TRG locus consists of reiterated V-J-J-C cassettes, with the goat TRG2 containing an additional cassette relative to the corresponding sheep and cattle loci.Conclusions: Taken together, these findings demonstrate that strong evolutionary pressures in the ruminant lineage have selected for the development of enlarged sets of TRB and TRG genes that contribute to a diverse T cell receptor repertoire. However, differences observed among the goat, sheep and cattle TRB and TRG genes indicate that distinct evolutionary histories, with independent expansions and/or contractions, have also affected each ruminant species.

Country
Italy
Keywords

570, Ruminant, Evolution, TRG locu, Gene Dosage, QH426-470, 630, Evolution, Molecular, ImMunoGeneTics database, T-Cell Receptor beta, Genetics, Animals, Phylogeny, TRB gene, TRB genes, Animal, Goats, T-Cell Receptor gamma, TRG genes, Genes, T-Cell Receptor gamma, Molecular, Goat genome, Goat genome, ImMunoGeneTics database, Ruminants, T cell receptor, TRB genes, TRB locus, TRG genes, TRG locus, TRB locu, Genes, Genes, T-Cell Receptor beta, Goat, TRG gene, T cell receptor, TRB locus, TRG locus, TP248.13-248.65, Biotechnology, Research Article

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
15
Top 10%
Average
Top 10%
Green
gold