To evaluate the scientific output in Biomedicine and Health Sciences in Andalusia in the context of the published works on the national scientific output in the last few years.Descriptive study with seven different information sources: a) final Report of the Experts Committee on Documentation from the Consejería de Salud de la Junta de Andalucía (IME: Indice Médico Español) suplemento internacional: 1980-1994; b) MEDLINE (Comprehensive Medline Ebsco, 1987-1993); c) EMBASE (Excerpta Medica; Elsevier Science Publisher) (1986-1994); d) IME, mechanized version: 1974-1993; Anales del FIS (1989-1993); e) Memoria REUNI: 1993-1994, and f) call for and resolution of research projects from the Consejería de Salud de la Junta de Andalucía (1994).Scientific output in health sciences in Andalusia has gown in parallel with the national output from other communities. Nevertheless, in absolute terms this output is scant and the big difference compared with Catalonia and Madrid--the two Autonomous Communities with the largest scientific output--remains unchanged. Grenada is the Andalusian province with the largest output, with Seville, Cordoba and Malaga ranking next. The output in the other Andalusian provinces is very small. The output is apparently independent from the number of inhabitants or the historic presence of a Medicine School. In contrast with Catalonia and Madrid, where the largest output originates in hospitals, the largest output in Andalusia comes from Universities; this fact suggests relevant differences in scientific sub-structure. This suggestion is also endorsed by the lower competition of Andalusia to obtain resources and the lower number of research scholarships. With these results in mind a scientific policy of positive discrimination is proposed which allows the Andalusian Autonomous Community to reach the standard of scientific output in biomedicine and health sciences according to its socioeconomic status.