Microchemistry analysis of trace elements and isotopes in fishes' calcified substances is an emerging approach to analyze the population structure, life history, and migration environmental history of fishes. With the increasing improvement of the researches and applications of otolith microchemistry, this approach has been a good tool for studying the ecology of tuna species. Currently, the research contents of tuna species' otolith microchemistry mainly include trace elements and isotopes, and the former is the emphasis and hotspot in applied research, playing a vital role in the researches of population partitioning, natal origin, migration environmental history, and life history of tuna species, especially bluefin tuna. However, most of the researches are focusing on the variation of otolith's Sr/Ca ratio, and there is no final conclusion on the relationships between the fractionation of isotopes C and O in otolith and the temperature. For the sake of exploiting the huge value of otolith microchemistry, it would be necessary to strengthen the researches on the deposition mechanisms of trace elements in otolith, and to analyze the spatio-temporal variations of various trace elements in otolith by comprehensive research methods.