Powered by OpenAIRE graph
Found an issue? Give us feedback
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ North-West Universit...arrow_drop_down
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
versions View all 1 versions
addClaim

Metagenomic analysis of rhizospheric soil microbial communities associated with Striga infested maize field

Authors: David, Oluchi Glory;

Metagenomic analysis of rhizospheric soil microbial communities associated with Striga infested maize field

Abstract

MSc (Biology), North-West University, Mahikeng Campus The most problematic weed in sub-Saharan Africa (SSA), often known as witchweed, is an obligate root hemiparasite of grasses that significantly reduces and severely damages food crops. In this study, the structure and functional diversity of the microbial communities in the Striga hermonthica-infested maize rhizosphere were compared to those in unaffected soil. We hypothesize that microbial structure and diversity are influenced by Striga infestations. To evaluate the microbial diversity in the soil and the availability of biocontrol organisms in the infested soil using shotgun sequencing in this study, we compared soil samples from Striga-infested soil with those from bulk soil. The major bacteria phyla observed in all samples were Proteobacteria, Actinobacteria, Bacteroidetes, Firmicutes, Acidobacteria, Chloroflexi, Verrucomicrobia, and Cyanobacteria. The archaea phyla were Crenarchaeota and Euryarchaeota and the predominant phyla of fungi included Ascomycota and unclassified Fungi. The alpha diversity analysis showed that there was no significant difference in the abundance of microbiomes between infested and uninfected soil, while the beta diversity analysis showed a significant difference at p > 0.05. Additionally, the major nutrient pathways relating to plant growth-promotion properties that were identified were those involving carbohydrates, phosphorus, nitrogen, and secondary metabolism. There have also been notable traces of functional categories present in the maize rhizosphere despite the invasion of this parasite. For the biological management of Striga for sustainable agriculture, mapping out strategies to isolate novel biocontrol agents and exploring genes that can be used to effectively control this weed will be helpful. Masters

Country
South Africa
Related Organizations
Keywords

Shotgun metagenomics, Biocontrol agents, Parasitic weed, SEED subsystem, Plant-microbe interactions, 630

  • BIP!
    Impact byBIP!
    selected citations
    These citations are derived from selected sources.
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    0
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Average
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Average
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Average
Powered by OpenAIRE graph
Found an issue? Give us feedback
selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average
Green