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Genome‐wide association studies in a diverse strawberry collection unveil loci controlling agronomic and fruit quality traits

Authors: Pilar Muñoz; Francisco Javier Roldán‐Guerra; Sujeet Verma; Mario Ruiz‐Velázquez; Rocío Torreblanca; Nicolás Oiza; Cristina Castillejo; +2 Authors

Genome‐wide association studies in a diverse strawberry collection unveil loci controlling agronomic and fruit quality traits

Abstract

Abstract Strawberries ( Fragaria sp.) are cherished for their organoleptic properties and nutritional value. However, breeding new cultivars involves the simultaneous selection of many agronomic and fruit quality traits, including fruit firmness and extended postharvest life. The strawberry germplasm collection here studied exhibited extensive phenotypic variation in 26 agronomic and fruit quality traits across three consecutive seasons. Phenotypic correlations and principal component analysis revealed relationships among traits and accessions, emphasizing the impact of plant breeding on fruit weight and firmness to the detriment of sugar or vitamin C content. Genetic diversity analysis on 124 accessions using 44,408 markers denoted a population structure divided into six subpopulations still retaining considerable diversity. Genome‐wide association studies for the 26 traits unveiled 121 significant marker‐trait associations distributed across 95 quantitative trait loci (QTLs). Multiple associations were detected for fruit firmness, a key breeding target, including a prominent locus on chromosome 6A. The candidate gene FaPG1 , controlling fruit softening and postharvest shelf life, was identified within this QTL region. Differential expression of FaPG1 confirmed its role as the primary contributor to natural variation in fruit firmness. A kompetitive allele‐specific PCR assay based on the single nucleotide polymorphism (SNP) AX‐184242253, associated with the 6A QTL, predicts a substantial increase in fruit firmness, validating its utility for marker‐assisted selection. In essence, this comprehensive study provides insights into the phenotypic and genetic landscape of the strawberry collection and lays a robust foundation for propelling the development of superior strawberry cultivars through precision breeding.

Country
Spain
Keywords

Quantitative Trait Loci, Plant culture, Genetic Variation, QH426-470, Fragaria, Polymorphism, Single Nucleotide, SB1-1110, Plant Breeding, Phenotype, Fruit, Genetics, Original Article, Genome-Wide Association Study

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
7
Top 10%
Average
Top 10%
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gold
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