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Anales del Jardín Botánico de Madrid
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Anales del Jardín Botánico de Madrid
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Towards an automated analysis of video-microscopy images of fungal morphogenesis

Authors: Javier Diéguez-Uribeondo; Juan C. Hernández-Crespo; Raquel Cortés; Fernando López; José L. Pech;

Towards an automated analysis of video-microscopy images of fungal morphogenesis

Abstract

Fungal morphogenesis is an exciting field of cell biology and several mathematical models have been developed to describe it. These models require experimental evidences to be corroborated and, therefore, there is a continuous search for new microscopy and image analysis techniques. In this work, we have used a Canny-edge-detector based technique to automate the generation of hyphal profiles and calculation of morphogenetic parameters such as diameter, elongation rates and hyphoid fitness. The results show that the data obtained with this technique are similar to published data generated with manualbased tracing techniques and that have been carried out on the same species or genus. Thus, we show that application of edge detector-based technique to hyphal growth represents an efficient and accurate method to study hyphal morphogenesis. This represents the first step towards an automated analysis of videomicroscopy images of fungal morphogenesis.

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Keywords

Modelo hifoide, hifa, morfogénesis, morphogenesis, Análisis automatizado, análisis automatizado, video-microscopía, Saprolegnia, fungal growth, Fungal growth, automated analysis, Image analysis, Análisis de imágenes, Hifa, image analysis, Morphogenesis, Hyphoid model, crecimiento de hongos, hyphoid model, Crecimiento de hongos, videomicroscopy, Video-microscopía, Botany, Automated analysis, Morfogénesis, modelo hifoide, hypha, Hypha, QK1-989, análisis de imágenes, Videomicroscopy

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average
Green
gold