Vision, challenges and opportunities for a Plant Cell Atlas

descriptionPublicationkeyboard_double_arrow_right Article , Other literature type 07 Sep 2021 Finland, Italy, United Kingdom, United States, United States, Belgium, Serbia English Publisher:eLife Sciences Publications, LtdJournal:eLife, volume 10 (eissn: 2050-084X,

Copyright policy )Funded by:NSF | 1st Workshop on the Plant..., NSF | RCN: Creating and Fosteri...

Authors: Jahed Ahmed; Oluwafemi Alaba; Gazala Ameen; Vaishali Arora; Mario A Arteaga-Vazquez; Alok Arun; Julia Bailey-Serres; +141 Authors

Jahed Ahmed; Oluwafemi Alaba; Gazala Ameen; Vaishali Arora; Mario A Arteaga-Vazquez; Alok Arun; Julia Bailey-Serres; Laura E Bartley; George W Bassel; Dominique C Bergmann; Edoardo Bertolini; Kaushal Kumar Bhati; Noel Blanco-Touriñán; Steven P Briggs; Javier Brumos; Benjamin Buer; Adrien Burlaocot; Sergio Alan Cervantes-Pérez; Sixue Chen; Bruno Contreras-Moreira; Francisco J CORPAS; Alfredo Cruz-Ramirez; Cesar L Cuevas-Velazquez; Josh T Cuperus; Lisa I David; Stefan de Folter; Peter H Denolf; Pingtao Ding; William P Dwyer; Matthew MS Evans; Nancy George; Pubudu P Handakumbura; Maria J Harrison; Elizabeth S Haswell; Venura Herath; Yuling Jiao; Robert E Jinkerson; Uwe John; Sanjay Joshi; Abhishek Joshi; Lydia-Marie Joubert; Ramesh Katam; Harmanpreet Kaur; Yana Kazachkova; Sunil K Kenchanmane Raju; Mather A Khan; Rajdeep Khangura; Ajay Kumar; Arun Kumar; Pankaj Kumar; Pradeep Kumar; Dhruv Lavania; Tedrick Thomas Salim Lew; Mathew G Lewsey; Chien-Yuan Lin; Dianyi Liu; Le Liu; Tie Liu; Ansul Lokdarshi; Ai My Luong; Iain C Macaulay; Sakil Mahmud; Ari Pekka Mähönen; Kamal Kumar Malukani; Alexandre P Marand; Carly A Martin; Claire D McWhite; Devang Mehta; Miguel Miñambres Martín; Jenny C Mortimer; Lachezar A Nikolov; Tatsuya Nobori; Trevor M Nolan; Aaron J Ogden; Marisa S Otegui; Mark-Christoph Ott; José M Palma; Puneet Paul; Atique U Rehman; Maida Romera-Branchat; Luis C Romero; Ronelle Roth; Saroj K Sah; Rachel Shahan; Shyam Solanki; Bao-Hua Song; Rosangela Sozzani; Gary Stacey; Anna N Stepanova; Nicolas L Taylor; Marcela K Tello-Ruiz; Tuan M Tran; Rajiv Kumar Tripathi; Batthula Vijaya Lakshmi Vadde Vadde; Tamas Varga; Marija Vidovic; Justin W Walley; Zhiyong Wang; Renate A Weizbauer; James Whelan; Asela J Wijeratne; Tingting Xiang; Shouling Xu; Ramin Yadegari; Houlin Yu; Hai Ying Yuan; Fabio Zanini; Feng Zhao; Jie Zhu; Xiaohong Zhuang; Suryatapa Ghosh Jha; Alexander T Borowsky; Benjamin J Cole; Noah Fahlgren; Andrew Farmer; Shao-shan Carol Huang; Purva Karia; Marc Libault; Nicholas J Provart; Selena L Rice; Maite Saura-Sanchez; Pinky Agarwal; Amir H Ahkami; Christopher R Anderton; Steven P Briggs; Jennifer AN Brophy; Peter Denolf; Luigi F Di Costanzo; Moises Exposito-Alonso; Stefania Giacomello; Fabio Gomez-Cano; Kerstin Kaufmann; Dae Kwan Ko; Sagar Kumar; Andrey V Malkovskiy; Naomi Nakayama; Toshihiro Obata; Marisa S Otegui; Gergo Palfalvi; Elsa H Quezada-Rodríguez; Rajveer Singh; R Glen Uhrig; Jamie Waese; Klaas Van Wijk; R Clay Wright; David W Ehrhardt; Kenneth D Birnbaum; Seung Y Rhee;

doi: 10.7554/elife.66877 , 10.60692/392y9-bc307 , 10.60692/7xqt1-9a293

pmid: 34491200

pmc: PMC8423441

handle: 10261/269271 , 11588/896515 , 10138/355027 , 2078.1/255673 , 10919/107685

Vision, challenges and opportunities for a Plant Cell Atlas

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Abstract

With growing populations and pressing environmental problems, future economies will be increasingly plant-based. Now is the time to reimagine plant science as a critical component of fundamental science, agriculture, environmental stewardship, energy, technology and healthcare. This effort requires a conceptual and technological framework to identify and map all cell types, and to comprehensively annotate the localization and organization of molecules at cellular and tissue levels. This framework, called the Plant Cell Atlas (PCA), will be critical for understanding and engineering plant development, physiology and environmental responses. A workshop was convened to discuss the purpose and utility of such an initiative, resulting in a roadmap that acknowledges the current knowledge gaps and technical challenges, and underscores how the PCA initiative can help to overcome them.

Countries

Finland, Italy, United Kingdom, United States, United States, Belgium, Serbia

Related Organizations

Indian Council of Agricultural Research
India
University of California, San Francisco
United States
University of Toronto
Canada
University of Alberta
Canada
University of Tennessee at Knoxville
United States

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Keywords

Advanced Techniques in Bioimage Analysis and Microscopy, chlamydomonas reinhardtii, Biomedical and clinical sciences, FOS: Political science, Plant Biology, Plant Science, maize, Data science, Agricultural and Biological Sciences, Sociology, 31 Biological sciences (for-2020), CHLOROPLASTS, cell biology, Plant Cells (mesh), Biology (General), Political science, 4D imaging; A. thaliana; Plant Cell Atlas; cell biology; chlamydomonas reinhardtii; location-to-function; maize; science forum; single-cell omics; translational research; Agriculture; Chlamydomonas reinhardtii; Chloroplasts; Computational Biology; Image Processing, Computer-Assisted; Plant Development; Plants; Zea mays; Plant Cells, Chlamydomonas reinhardtii (mesh), Physics, Life Sciences, General Medicine, Plants, ARABIDOPSIS, Social science, C-4 PHOTOSYNTHESIS, FOS: Philosophy, ethics and religion, Computational Biology (mesh), SYSTEMS BIOLOGY, Medicine, QH301-705.5, Science, Biophysics, Agriculture (mesh), Epistemology, Environmental science, 42 Health sciences (for-2020), Conceptual framework, Plant Cells, Molecular Biology, Biology, 580, 31 Biological Sciences (for-2020), Environmental stewardship, Health sciences, 500, Computational Biology, Chloroplasts (mesh), 11831 Plant biology, Atlas (anatomy), Computer-Assisted (mesh), Computer science, science forum, translational research, FOS: Biological sciences, Plant Development (mesh), General Biochemistry, PLASTIDS, Biochemistry and Cell Biology, Stewardship (theology), Chlamydomonas reinhardtii, GENERATION, Life Sciences & Biomedicine - Other Topics, Chloroplasts, Image Processing, Component (thermodynamics), Zea mays (mesh), 0601 Biochemistry and Cell Biology, Computer-Assisted, Cellular Imaging, Plant Cell Atlas Consortium, Image Processing, Computer-Assisted, Environmental resource management, Ecology, General Neuroscience, Q, Politics, R, Agriculture, Biological Sciences, Plant Cell Atlas, single-cell omics, FOS: Sociology, VOCABULARY, Thermodynamics, location-to-function, Life Sciences & Biomedicine, 4D imaging, DATABASE, 0601 Biochemistry and Cell Biology (for), Plant Development, Genetics and Molecular Biology, FOS: Law, Zea mays, MECHANISMS, Molecular Mechanisms of Plant Development and Regulation, Molecular Mechanisms of Photosynthesis and Photoprotection, Biochemistry, Genetics and Molecular Biology, Plants (mesh), Paradigm shift, General Immunology and Microbiology, Paleontology, Cell Biology, GENE, Philosophy, 32 Biomedical and clinical sciences (for-2020), A. thaliana, 3108 Plant Biology (for-2020), Law

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