Downloads provided by UsageCountsGene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome
Copyright policy )NSF| Ecology and biogeochemical impacts of DNA and RNA viruses throughout the global oceans ,
TARA| Tara Oceans ,
NSF| Ecological impacts and drivers of double-stranded DNA viral communities in the global oceans ,
ANR| Amidex ,
ANR| OCEANOMICS ,
EC| DIATOMIC ,
EC| DD-DeCaF
Guillem Salazar; Lucas Paoli; Adriana Alberti; Jaime Huerta-Cepas; Hans-Joachim Ruscheweyh; Miguelangel Cuenca; Christopher M. Field; +64 Authors
Guillem Salazar; Lucas Paoli; Adriana Alberti; Jaime Huerta-Cepas; Hans-Joachim Ruscheweyh; Miguelangel Cuenca; Christopher M. Field; Luis Pedro Coelho; Corinne Cruaud; Stefan Engelen; Ann C. Gregory; Karine Labadie; Claudie Marec; Eric Pelletier; Marta Royo-Llonch; Simon Roux; Pablo Sánchez; Hideya Uehara; Ahmed A. Zayed; Georg Zeller; Margaux Carmichael; Céline Dimier; Joannie Ferland; Stefanie Kandels; Marc Picheral; Sergey Pisarev; Julie Poulain; Silvia G. Acinas; Marcel Babin; Peer Bork; Emmanuel Boss; Chris Bowler; Guy Cochrane; Colomban de Vargas; Michael Follows; Gabriel Gorsky; Nigel Grimsley; Lionel Guidi; Pascal Hingamp; Daniele Iudicone; Olivier Jaillon; Stefanie Kandels-Lewis; Lee Karp-Boss; Eric Karsenti; Fabrice Not; Hiroyuki Ogata; Stephane Pesant; Nicole Poulton; Jeroen Raes; Christian Sardet; Sabrina Speich; Lars Stemmann; Matthew B. Sullivan; Shinichi Sunagawa; Patrick Wincker; Silvia G. Acinas; Marcel Babin; Peer Bork; Chris Bowler; Colomban de Vargas; Lionel Guidi; Pascal Hingamp; Daniele Iudicone; Lee Karp-Boss; Eric Karsenti; Hiroyuki Ogata; Stephane Pesant; Sabrina Speich; Matthew B. Sullivan; Patrick Wincker; Shinichi Sunagawa;
Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome
Ocean microbial communities strongly influence the biogeochemistry, food webs, and climate of our planet. Despite recent advances in understanding their taxonomic and genomic compositions, little is known about how their transcriptomes vary globally. Here, we present a dataset of 187 metatranscriptomes and 370 metagenomes from 126 globally distributed sampling stations and establish a resource of 47 million genes to study community-level transcriptomes across depth layers from pole-to-pole. We examine gene expression changes and community turnover as the underlying mechanisms shaping community transcriptomes along these axes of environmental variation and show how their individual contributions differ for multiple biogeochemically relevant processes. Furthermore, we find the relative contribution of gene expression changes to be significantly lower in polar than in non-polar waters and hypothesize that in polar regions, alterations in community activity in response to ocean warming will be driven more strongly by changes in organismal composition than by gene regulatory mechanisms. VIDEO ABSTRACT.
United States, Australia, France, Belgium, Saudi Arabia
- Spanish National Research Council Spain
- Helmholtz Association of German Research Centres Germany
- Russian Academy of Sciences Russian Federation
- Villefranche Oceanographic Laboratory France
- Université d'Aix-Marseille France
ASSEMBLY PROCESSES, Messenger, DIVERSITY, microbial ecology, Medical and Health Sciences, global ocean microbiome, Microbial ecology, CARBON, biogeochemistry, 11 Medical and Health Sciences, Eco-systems Biology, CLIMATE-CHANGE, Geography, Microbiota, Temperature, Biological Sciences, Biogeochemistry, CYANOBACTERIA, GENOME, Global Ocean Microbiome, BACTERIA, [SDV.BBM.GTP] Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN], Life Sciences & Biomedicine, community turnover, Community turnover, 570, Biochemistry & Molecular Biology, Metatranscriptome, SURFACE, Oceans and Seas, Tara Oceans, [SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Ocean Warming, metagenome, Article, ocean warming, eco-systems biology, Genetics, metatranscriptome, Seawater, RNA, Messenger, Molecular Biology/Genomics [q-bio.GN], Science & Technology, 31 Biological sciences, 500, Molecular Sequence Annotation, Cell Biology, 32 Biomedical and clinical sciences, 06 Biological Sciences, Gene Expression Change, Climate Action, Tara Oceans Coordinators, Gene Expression Regulation, Cardiovascular and Metabolic Diseases, RNA, Metagenome, BIODIVERSITY, Transcriptome, BIOGEOGRAPHY, Developmental Biology, gene expression change
ASSEMBLY PROCESSES, Messenger, DIVERSITY, microbial ecology, Medical and Health Sciences, global ocean microbiome, Microbial ecology, CARBON, biogeochemistry, 11 Medical and Health Sciences, Eco-systems Biology, CLIMATE-CHANGE, Geography, Microbiota, Temperature, Biological Sciences, Biogeochemistry, CYANOBACTERIA, GENOME, Global Ocean Microbiome, BACTERIA, [SDV.BBM.GTP] Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN], Life Sciences & Biomedicine, community turnover, Community turnover, 570, Biochemistry & Molecular Biology, Metatranscriptome, SURFACE, Oceans and Seas, Tara Oceans, [SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Ocean Warming, metagenome, Article, ocean warming, eco-systems biology, Genetics, metatranscriptome, Seawater, RNA, Messenger, Molecular Biology/Genomics [q-bio.GN], Science & Technology, 31 Biological sciences, 500, Molecular Sequence Annotation, Cell Biology, 32 Biomedical and clinical sciences, 06 Biological Sciences, Gene Expression Change, Climate Action, Tara Oceans Coordinators, Gene Expression Regulation, Cardiovascular and Metabolic Diseases, RNA, Metagenome, BIODIVERSITY, Transcriptome, BIOGEOGRAPHY, Developmental Biology, gene expression change
selected citations These citations are derived from selected sources.This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).358 popularity This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.Top 0.1% influence This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).Top 10% impulse This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.Top 0.1% views 47 downloads 181 - 47views181downloads
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These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
Citations provided by BIP!popularityPopularity provided by BIP!
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
Popularity provided by BIP!influenceInfluence provided by BIP!
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
Influence provided by BIP!impulseImpulse provided by BIP!
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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