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Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range

Authors: Henderson, Gemma; Cox, Faith; Ganesh, Siva; Jonker, Arjan; Young, Wayne; Janssen, Peter H.; Abecia, Leticia; +140 Authors

Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range

Abstract

AbstractRuminant livestock are important sources of human food and global greenhouse gas emissions. Feed degradation and methane formation by ruminants rely on metabolic interactions between rumen microbes and affect ruminant productivity. Rumen and camelid foregut microbial community composition was determined in 742 samples from 32 animal species and 35 countries, to estimate if this was influenced by diet, host species, or geography. Similar bacteria and archaea dominated in nearly all samples, while protozoal communities were more variable. The dominant bacteria are poorly characterised, but the methanogenic archaea are better known and highly conserved across the world. This universality and limited diversity could make it possible to mitigate methane emissions by developing strategies that target the few dominant methanogens. Differences in microbial community compositions were predominantly attributable to diet, with the host being less influential. There were few strong co-occurrence patterns between microbes, suggesting that major metabolic interactions are non-selective rather than specific.

Countries
Denmark, Netherlands, Finland, Australia, Canada, Switzerland, Slovenia, Denmark
Keywords

rumen microorganisms, mikrobiologija, 590, 7Th Order, 630, Feeds and feeding. Animal nutrition, Phylogeny, Multidisciplinary, ta412, Geography, Residual Feed-Intake, Ruminants, Genomics, Veterinary microbiology, DNA, Archaeal, Host-Pathogen Interactions, info:eu-repo/classification/udc/579:599.735, DNA, Bacterial, 570, Rumen, microbial communities, kotieläintuotanto, mikrobne združbe, Environments, Article, mehiläistalous, Species Specificity, Life Science, Animals, DNA Barcoding, Taxonomic, Protozoa, vamp, prežvekovalci, Methanogenic Archaea, Bacteria, riistanhoito, Genetic Variation, Sequence Analysis, DNA, DNA, Protozoan, Archaea, Diet, Gastrointestinal Microbiome, kalatalous, Metabolism, ruminants, 1000 General, prehrana živali, Cattle

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selected citations
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This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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