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Journal of Proteome Research
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Journal of Proteome Research
Article . 2015 . Peer-reviewed
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Quest for Missing Proteins: Update 2015 on Chromosome-Centric Human Proteome Project

update 2015 on Chromosome-Centric Human Proteome Project
Authors: P. Horvatovich; E. K. Lundberg; Y. Chen; T. Sung; F. He; E. C. Nice; R. J. Goode; +47 Authors

Quest for Missing Proteins: Update 2015 on Chromosome-Centric Human Proteome Project

Abstract

This paper summarizes the recent activities of the Chromosome-Centric Human Proteome Project (C-HPP) consortium, which develops new technologies to identify yet-to-be annotated proteins (termed "missing proteins") in biological samples that lack sufficient experimental evidence at the protein level for confident protein identification. The C-HPP also aims to identify new protein forms that may be caused by genetic variability, post-translational modifications, and alternative splicing. Proteogenomic data integration forms the basis of the C-HPP's activities; therefore, we have summarized some of the key approaches and their roles in the project. We present new analytical technologies that improve the chemical space and lower detection limits coupled to bioinformatics tools and some publicly available resources that can be used to improve data analysis or support the development of analytical assays. Most of this paper's content has been compiled from posters, slides, and discussions presented in the series of C-HPP workshops held during 2014. All data (posters, presentations) used are available at the C-HPP Wiki (http://c-hpp.webhosting.rug.nl/) and in the Supporting Information.

Countries
Switzerland, Italy, Netherlands, Netherlands, Netherlands, Italy
Keywords

Proteomics, LC−MS, Antibody enrichment, Proteome, Bioinformatics, antibody enrichment; bioinformatics; Chromosome-Centric Human Proteome Project; LC-MS; missing proteins; proteomics; Biochemistry; Chemistry (all), Missing proteins, 576, proteomics, Tandem Mass Spectrometry, antibody enrichment, Humans, Chromosome Mapping, Proteins, bioinformatics, Genomics, LC-MS, Chromosome-Centric Human Proteome Project, Chromosome centric human proteome project, missing proteins, Chromatography, Liquid, ddc: ddc:576

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selected citations
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This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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