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Mechanism of cargo-directed Atg8 conjugation during selective autophagy

Authors: Fracchiolla, Dorotea; Sawa-Makarska, Justyna; Zens, Bettina; Ruiter, Anita de; Zaffagnini, Gabriele; Brezovich, Andrea; Romanov, Julia; +4 Authors

Mechanism of cargo-directed Atg8 conjugation during selective autophagy

Abstract

Selective autophagy is mediated by cargo receptors that link the cargo to the isolation membrane via interactions with Atg8 proteins. Atg8 proteins are localized to the membrane in an ubiquitin-like conjugation reaction, but how this conjugation is coupled to the presence of the cargo is unclear. Here we show that the S. cerevisiae Atg19, Atg34 and the human p62, Optineurin and NDP52 cargo receptors interact with the E3-like enzyme Atg12~Atg5-Atg16, which stimulates Atg8 conjugation. The interaction of Atg19 with the Atg12~Atg5-Atg16 complex is mediated by its Atg8-interacting motifs (AIMs). We identify the AIM-binding sites in the Atg5 subunit and mutation of these sites impairs selective autophagy. In a reconstituted system the recruitment of the E3 to the prApe1 cargo is sufficient to drive accumulation of conjugated Atg8 at the cargo. The interaction of the Atg12~Atg5-Atg16 complex and Atg8 with Atg19 is mutually exclusive, which may confer directionality to the system.

Country
Austria
Keywords

106002 Biochemie, UBIQUITIN-LIKE PROTEINS, Autophagy-Related Proteins, Cell Cycle Proteins, Biochemistry, Protein Structure, Secondary, Autophagy-Related Protein 5, SACCHAROMYCES-CEREVISIAE, SWISS-MODEL WORKSPACE, protein conjugation, SCAFFOLD PROTEIN, Biology (General), Cloning, Molecular, IN-VIVO, Q, R, Nuclear Proteins, Molecular Docking Simulation, 106054 Zoologie, Medicine, biochemical reconstitution, Autophagy-Related Protein 12, Protein Binding, STRUCTURAL BASIS, QH301-705.5, ATG12-ATG5 CONJUGATE, Science, LIPIDATION, 106054 Zoology, membrane biology, Autophagy, Escherichia coli, Humans, Protein Interaction Domains and Motifs, Amino Acid Sequence, selective autophagy, Binding Sites, Membrane Transport Proteins, 106002 Biochemistry, Biological Transport, Autophagy-Related Protein 8 Family, Gene Expression Regulation, MOLECULAR-DYNAMICS, cargo receptor, MEMBRANE, HeLa Cells

  • BIP!
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    selected citations
    These citations are derived from selected sources.
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    60
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Top 10%
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Top 10%
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Top 10%
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
60
Top 10%
Top 10%
Top 10%
Green
gold