Since a few years ago, electrical energy storage has been attractive as an effective use of electricity and coping with the momentary voltage drop. Above all, flywheel energy storage systems (FESS) using superconductor have advantages of long life, high energy density, and high efficiency (Subkhan & Komori, 2011), and is now considered as enabling technology for many applications, such as space satellites and hybrid electric vehicles (Samineni et al., 2006; Suvire & Mercado, 2012). Also, the contactless nature of magnetic bearings brings up low wear, absence of lubrication and mechanical maintenance, and wide range of work temperature (Bitterly, 1998; Beach & Christopher, 1998). Moreover, the closed-loop control of magnetic bearings enables active vibration suppression and on-line control of bearing stiffness (Cimuca et al., 2006; Park et al., 2008).