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Analysis of extended haplotype in Korean cattle (Hanwoo) population

Authors: Lim, Dajeong; Choi, Bong Hwan; Cho, Yong Min; Chai, Han Ha; Jang, Gul Won; Gondro, Cedric; Jeoung, Yeoung Ho; +1 Authors

Analysis of extended haplotype in Korean cattle (Hanwoo) population

Abstract

Korean cattle (Hanwoo) are categorized into three breeds based on color: brown, brindle, and black. Among these breeds, brown Hanwoo has been subjected to intensive selection to improve meat traits. To identify genetic traces driven by recent selection in brown Hanwoo, we scanned the genomes of brown and brindle Hanwoo using a bovine SNP chip. We identified 17 candidate selection signatures in brown Hanwoo and sequenced four candidate regions from 10 individuals each of brown and brindle Hanwoo. In particular, non-synonymous SNPs in the ADSL gene (K88M, L189H, and R302Q) might have had mutational effects on protein structure as a result of altering the purine pathway during nucleotide breakdown. The ADSL gene was previously reported to affect meat quality and yield in livestock. Meat quality and yield are main breeding goals for brown Hanwoo, and our results support a potential causal influence of non-synonymous SNPs in the ADSL gene. [BMB Reports 2016; 49(9): 514-519].

Keywords

Principal Component Analysis, Genome, Meat, Genotype, Homozygote, Adenylosuccinate Lyase, Sequence Analysis, DNA, Breeding, Polymorphism, Single Nucleotide, Haplotypes, Republic of Korea, Animals, Cattle, ADSL; Brindle Hanwoo; Extendend haplotype; Hanwoo, Research Article

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    influence
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
7
Top 10%
Average
Average
Green
gold