Apis mellifera pomonella is one of two subspecies that represent the eastern limits of honey bee (Apis mellifera) distribution, and it is important to understand its biogeography and evolution. Despite this, A. m. pomonella was not investigated after its discovery 20 years ago. In particular, it is not known if it was hybridized or not with exotic subspecies introduced by beekeepers. In this study, we analysed the variation in honey bee forewing shape in Kazakhstan. Bees were collected from apiaries, where the origin of the queens was not controlled by beekeepers; they formed a group called “local bees”, and apiaries where queens declared as either A. m. carnica or A. m. mellifera were obtained from queen breeders. The two later groups were called “exotic bees”. We showed that local bees are still distinct from exotic ones. However, some samples showed signs of introgression with exotic subspecies from lineage C. In terms of wing shape, the local bees were most similar to lineage O. We concluded that the local bees most likely represented A. m. pomonella. We provided wing images and identification data, which can help to identify A. m. pomonella and protect it in the future. It is interesting that the nearby honey bee population sourced from China, which is not separated by any clear barrier to gene flow, belonged to lineage M.