The Aviles Canyon System (Northern Atlantic coast of Spain) is one of the ten marine regions studied in the Spanish seas by the LIFE+ INDEMARES project, which aims to identify special areas of conservation within the Natura 2000 Network. This study aims to characterize the composition and distribution of the macrobenthic fauna in order to provide baseline data to obtain a basic knowledge of the environment. Three oceanographic surveys were carried out to investigate species and habitats of this deep-sea ecosystem. The stations were sampled using a box corer, in order to evaluate the distribution and biodiversity of the macroinfauna, and to analyse the granulometric composition and the organic matter content. Sediments were mainly sandy in nature, the finest sediments with the highest organic matter content were found in the deepest areas, while coarser sediments were located in shallow stations. Polychaetes were the best represented group in total number of species and individuals, followed by crustaceans and molluscs. Five major macrobenthic assemblages were determined through multivariate analyses. Bathymetry and sedimentary composition were the main factors structuring the benthic community separating shallow and coarser stations from deeper and finer ones.