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https://doi.org/10.32942/x2ph0...
Article . 2025 . Peer-reviewed
License: CC BY NC ND
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Trends in Genetics
Article . 2025 . Peer-reviewed
License: CC BY
Data sources: Crossref
Trends in Genetics
Other literature type . 2025
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Decoding Genomic Landscapes of Introgression

Authors: Xin Huang; Josef Hackl; Martin Kuhlwilm;

Decoding Genomic Landscapes of Introgression

Abstract

Genomic landscapes of introgression provide valuable information for how different evolutionary processes interact and leave signatures in genomes. The recent expansion of genomic datasets across diverse taxa, together with advances in methodological development, has created new opportunities to investigate the impact of introgression along individual genomes in various clades, making the precise identification of introgressed loci a rapidly evolving area of research. In this review, we summarize recent methodological progress within three major categories: summary statistics, probabilistic modeling, and supervised learning. We examine how these approaches have been applied to data beyond humans and discuss the challenges associated with their application. Finally, we outline future directions for each category, including accessible implementation, transparent analysis, and systematic benchmarking.

Country
Austria
Related Organizations
Keywords

106036 Populationsgenetik, 106014 Genomics, Genome, Models, Genetic, introgression, population genetics, Genomics, 102019 Machine learning, Genetic Introgression, Evolution, Molecular, machine learning, 102019 Machine Learning, 106014 Genomik, admixture, Humans, Animals, 106036 Population genetics

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    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    11
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Top 10%
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
11
Top 10%
Average
Top 10%
hybrid