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Journal of Dairy Science
Article . 2015 . Peer-reviewed
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Journal of Dairy Science
Article
License: CC BY NC ND
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Journal of Dairy Science
Article . 2015
License: CC BY NC
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Estimation of genomic breeding values for milk yield in UK dairy goats

Authors: Mucha, S; Mrode, R; MacLaren-Lee, I; Coffey, MP; Conington, JE;

Estimation of genomic breeding values for milk yield in UK dairy goats

Abstract

The objective of this study was to estimate genomic breeding values for milk yield in crossbred dairy goats. The research was based on data provided by 2 commercial goat farms in the UK comprising 590,409 milk yield records on 14,453 dairy goats kidding between 1987 and 2013. The population was created by crossing 3 breeds: Alpine, Saanen, and Toggenburg. In each generation the best performing animals were selected for breeding, and as a result, a synthetic breed was created. The pedigree file contained 30,139 individuals, of which 2,799 were founders. The data set contained test-day records of milk yield, lactation number, farm, age at kidding, and year and season of kidding. Data on milk composition was unavailable. In total 1,960 animals were genotyped with the Illumina 50K caprine chip. Two methods for estimation of genomic breeding value were compared-BLUP at the single nucleotide polymorphism level (BLUP-SNP) and single-step BLUP. The highest accuracy of 0.61 was obtained with single-step BLUP, and the lowest (0.36) with BLUP-SNP. Linkage disequilibrium (r(2), the squared correlation of the alleles at 2 loci) at 50 kb (distance between 2 SNP) was 0.18. This is the first attempt to implement genomic selection in UK dairy goats. Results indicate that the single-step method provides the highest accuracy for populations with a small number of genotyped individuals, where the number of genotyped males is low and females are predominant in the reference population.

Country
United Kingdom
Related Organizations
Keywords

Male, Genotyping Techniques, Dairy goat, Breeding, Polymorphism, Single Nucleotide, Linkage Disequilibrium, genomic selection, milk yield, Animals, Lactation, Selection, Genetic, Alleles, Oligonucleotide Array Sequence Analysis, Milk yield, Goats, Genomics, United Kingdom, Pedigree, Dairying, Phylogeography, Milk, Genetic Loci, dairy goat, Female, single step

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
46
Top 10%
Top 10%
Top 10%
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