The relative abundance and size distributions of juvenile winter flounder, Pseudopleuronectes americanus, were compared in two areas; an anthropogenically altered marina basin and a natural intertidal flat habitat. Winter flounder were sampled from March through November 1990–95 with a 1.0 m beam trawl. No significant difference was observed in catch-per-unit-effort between areas but significant differences were found between seasons. Relative abundance (number of flounder/ m2) increased from spring (0.007 marina and 0.011 intertidal flats) to summer (0.059 marina and 0.051 intertidal flats) and then declined slightly in the autumn (0.047 marina and 0.027 intertidal flats). Relative abundance was similar between areas from 1990–95 but differed between years. Length frequency distributions of winter flounder were similar between areas for all seasons but mean sizes were statistically different in summer. These results suggest that juvenile winter flounder are equally abundant in both natural intertidal habitats and marina basins, indicating that both could serve as nursery areas. However, more specific research is required to resolve the relative importance of marinas and the factors involved in utilization of each habitat.