Abstract Most Aristolochiaceae species studied so far are from temperate regions, bearing self‐compatible protogynous trap flowers. Although self‐incompatibility has been suggested for tropical species, the causes of self‐sterility in this family remain unknown. To fill this gap, we studied the pollination of the tropical Aristolochia esperanzae, including the physical and physiological anti‐selfing mechanisms. Floral visitors trapped inside flowers were collected to determine the pollinators. Protogyny was characterized by observing the temporal expression of sexual phases and stigmatic receptivity tests. The breeding system was investigated using hand‐pollination treatments. Pollen tube growth was observed using epifluorescence to identify the self‐incompatibility mechanism. Flies were the most frequent visitors found inside A. esperanzae trap flowers, with individuals from the family Ulidiidae being potential pollinators since they carried pollen. The characteristic flower odour and presence of larvae indicate that A. esperanzae deceives flies through oviposition‐site mimicry. Although this species showed incomplete protogyny, stigmatic receptivity decreased during the male phase, avoiding self‐pollination. Fruits developed only after cross‐ and open pollination, indicating that the population is non‐autonomous, non‐apomictic, and self‐sterile. This occurred through a delay in the growth of geitonogamous pollen tubes to the ovary and lower ovule penetration, indicating a late‐acting self‐incompatibility mechanism. Our findings expand the number of families in which late‐acting self‐incompatibility has been reported, demonstrating that it is more widespread than previously thought, especially when considering less‐studied tropical species among the basal angiosperms.