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FEBS Journal
Article . 2024 . Peer-reviewed
License: Wiley Online Library User Agreement
Data sources: Crossref
FEBS Journal
Article . 2024
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Structural determinants of cold activity and glucose tolerance of a family 1 glycoside hydrolase ( GH1 ) from Antarctic Marinomonas sp. ef1

Authors: Louise Jane Gourlay; Marco Mangiagalli; Elisabetta Moroni; Marina Lotti; Marco Nardini;

Structural determinants of cold activity and glucose tolerance of a family 1 glycoside hydrolase ( GH1 ) from Antarctic Marinomonas sp. ef1

Abstract

Cold‐active enzymes support life at low temperatures due to their ability to maintain high activity in the cold and can be useful in several biotechnological applications. Although information on the mechanisms of enzyme cold adaptation is still too limited to devise general rules, it appears that very diverse structural and functional changes are exploited in different protein families and within the same family. In this context, we studied the cold adaptation mechanism and the functional properties of a member of the glycoside hydrolase family 1 (GH1) from the Antarctic bacterium Marinomonas sp. ef1. This enzyme exhibits all typical functional hallmarks of cold adaptation, including high catalytic activity at 5 °C, broad substrate specificity, low thermal stability, and higher lability of the active site compared to the overall structure. Analysis of the here‐reported crystal structure (1.8 Å resolution) and molecular dynamics simulations suggest that cold activity and thermolability may be due to a flexible region around the active site (residues 298–331), whereas the dynamic behavior of loops flanking the active site (residues 47–61 and 407–413) may favor enzyme‐substrate interactions at the optimal temperature of catalysis ( T opt ) by tethering together protein regions lining the active site. Stapling of the N‐terminus onto the surface of the β‐barrel is suggested to partly counterbalance protein flexibility, thus providing a stabilizing effect. The tolerance of the enzyme to glucose and galactose is accounted for by the presence of a “gatekeeping” hydrophobic residue (Leu178), located at the entrance of the active site.

Country
Italy
Keywords

cold-active enzyme; crystal structure; glucose tolerance; psychrophiles; β-glucosidase, crystal structure, Glycoside Hydrolases, glucose tolerance, Protein Conformation, cold-active enzyme; crystal structure; glucose tolerance; psychrophiles; β-glucosidase;, cold‐active enzyme, Antarctic Regions, Molecular Dynamics Simulation, Crystallography, X-Ray, β‐glucosidase, Substrate Specificity, Cold Temperature, Glucose, Bacterial Proteins, Catalytic Domain, psychrophiles, Enzyme Stability, Amino Acid Sequence, Marinomonas

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
8
Top 10%
Average
Top 10%
Green