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Fuzzy regions in an intrinsically disordered protein impair protein–protein interactions

Authors: Gruet, Antoine; Dosnon, Marion; Blocquel, David; Brunel, Joanna; Gerlier, Denis; Das, Rahul K.; Bonetti, Daniela; +4 Authors

Fuzzy regions in an intrinsically disordered protein impair protein–protein interactions

Abstract

Despite the partial disorder‐to‐order transition that intrinsically disordered proteins often undergo upon binding to their partners, a considerable amount of residual disorder may be retained in the bound form, resulting in a fuzzy complex. Fuzzy regions flanking molecular recognition elements may enable partner fishing through non‐specific, transient contacts, thereby facilitating binding, but may also disfavor binding through various mechanisms. So far, few computational or experimental studies have addressed the effect of fuzzy appendages on partner recognition by intrinsically disordered proteins. In order to shed light onto this issue, we used the interaction between the intrinsically disordered C‐terminal domain of the measles virus (MeV) nucleoprotein ( N TAIL ) and the X domain ( XD ) of the viral phosphoprotein as model system. After binding to XD , the N‐terminal region of N TAIL remains conspicuously disordered, with α‐helical folding taking place only within a short molecular recognition element. To study the effect of the N‐terminal fuzzy region on N TAIL / XD binding, we generated N‐terminal truncation variants of N TAIL , and assessed their binding abilities towards XD . The results revealed that binding increases with shortening of the N‐terminal fuzzy region, with this also being observed with hsp70 (another MeV N TAIL binding partner), and for the homologous N TAIL / XD pairs from the Nipah and Hendra viruses. Finally, similar results were obtained when the MeV N TAIL fuzzy region was replaced with a highly dissimilar artificial disordered sequence, supporting a sequence‐independent inhibitory effect of the fuzzy region.

Countries
Italy, Italy, France
Keywords

Deletion variants; Excluded volume; Intrinsically disordered proteins; Partner binding; Split-GFP; Biochemistry; Cell Biology; Molecular Biology, [SDV.BIBS] Life Sciences [q-bio]/Quantitative Methods [q-bio.QM], Molecular Biology/Structural Biology [q-bio.BM], 070, [SDV.BBM.BS] Life Sciences [q-bio]/Biochemistry, Molecular Biology/Structural Biology [q-bio.BM], 327, Phosphoproteins, [SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM], [SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry, Intrinsically Disordered Proteins, Nucleoproteins, Measles virus, deletion variants; excluded volume; intrinsically disordered proteins; partner binding; split-GFP, Protein Binding

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
47
Top 10%
Top 10%
Top 10%
bronze