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Article . 2014 . Peer-reviewed
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Article . 2014
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Metabolic states with maximal specific rate carry flux through an elementary flux mode

Authors: Wortel, M.T.; Peters, H.; Hulshof, J.; Teusink, B.; Bruggeman, F.J.;

Metabolic states with maximal specific rate carry flux through an elementary flux mode

Abstract

Specific product formation rates and cellular growth rates are important maximization targets in biotechnology and microbial evolution. Maximization of a specific rate (i.e. a rate expressed per unit biomass amount) requires the expression of particular metabolic pathways at optimal enzyme concentrations. In contrast to the prediction of maximal product yields, any prediction of optimal specific rates at the genome scale is currently computationally intractable, even if the kinetic properties of all enzymes are available. In the present study, we characterize maximal‐specific‐rate states of metabolic networks of arbitrary size and complexity, including genome‐scale kinetic models. We report that optimal states are elementary flux modes, which are minimal metabolic networks operating at a thermodynamically‐feasible steady state with one independent flux. Remarkably, elementary flux modes rely only on reaction stoichiometry, yet they function as the optimal states of mathematical models incorporating enzyme kinetics. Our results pave the way for the optimization of genome‐scale kinetic models because they offer huge simplifications to overcome the concomitant computational problems.DatabaseThe mathematical model described here has been submitted to the JWS Online Cellular Systems Modelling Database and can be accessed at http://jjj.mib.ac.uk/database/wortel2/index.html free of charge.[Database section added 14 May 2014 after original online publication]

Country
Netherlands
Keywords

570, Kinetics, Systems Biology, Models, Biological, Metabolic Networks and Pathways, Biotechnology, Enzymes

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
59
Top 10%
Top 10%
Top 10%
bronze