Powered by OpenAIRE graph
Found an issue? Give us feedback
addClaim

Large Scale Analysis of Small Repeats via Mining of the Human Genome

Authors: van den Berg, I.; Bosnacki, D.; Hilbers, P.A.J.;

Large Scale Analysis of Small Repeats via Mining of the Human Genome

Abstract

Small repetitive sequences, called tandem repeats, are abundant throughout the human genome, both in coding and in non-coding regions. Their role is still mostly unknown, but at least 20 of those repetitive sequences have been related to neurodegenerative disorders. The mutational process that is the basis of these disorders is not yet fully understood. Comprehending the origin, function and possible usefulness of the tandem repeats, will require analysis of huge data from various sources. In this paper we attempt such a large scale analysis of short repeats. We describe and discuss the steps that are needed to be taken to perform large scale genomic analysis. We define tandem repeats and compare the results of repeat localization with genome annotations. We show that the degree of repetitiveness is different for the human chromosomes. Chromosome 19 and 17 have more repeats per mega base pair than any of the other chromosomes, the Y chromosome has the least. We also demonstrate that some repeat motifs are much more common than others. Mono- and dinucleotide repeats are the most abundant, with A and AAC the most common motifs, while CG is hardly present within the genome. Repeats with unit length three are under represented on the genome and repeats with unit length 9 are extremely rare.

Country
Netherlands
  • BIP!
    Impact byBIP!
    selected citations
    These citations are derived from selected sources.
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    1
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Average
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Average
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Average
Powered by OpenAIRE graph
Found an issue? Give us feedback
selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
1
Average
Average
Average
Upload OA version
Are you the author of this publication? Upload your Open Access version to Zenodo!
It’s fast and easy, just two clicks!