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Approximate Hashing for Bioinformatics

Authors: Arbitman, Guy; Klein, Shmuel; Peterlongo, Pierre; Shapira, Dana;

Approximate Hashing for Bioinformatics

Abstract

The paper extends ideas from data compression by deduplication to the Bioinformatic field. The specific problems on which we show our approach to be useful are the clustering of a large set of DNA strings and the search for approximate matches of long substrings, both based on the design of what we call an approximate hashing function. The outcome of the new procedure is very similar to the clustering and search results obtained by accurate tools, but in much less time and with less required memory.

Country
France
Keywords

[INFO.INFO-BI] Computer Science [cs]/Bioinformatics [q-bio.QM]

  • BIP!
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    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    2
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Average
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Average
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Average
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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
2
Average
Average
Average
Green