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Divide-and-conquer strategies for large-scale simulations in R

Authors: Hui Zhang 0006; Yiwen Zhong; Juan Lin 0001;

Divide-and-conquer strategies for large-scale simulations in R

Abstract

As the volume of data and technical complexity of large-scale analysis increases, many domain experts desire a computational powerful but still familiar analysis interface to fully participate in the analysis workflow by just focusing on individual datasets, leaving the large-scale computation to the system. Towards this goal, we discuss Divide-and-Conquer strategies that can help domain experts perform large-scale simulations by scaling up their analysis code written in R, the most popuar data science and interactive analysis language. We then proceed to implementing the Divide-and-Conquer strategies as a dental imaging analysis framework, VisRden, that uses R as the analysis language, allowing advanced users to provide custom R scripts and variables to be fully embedded into the large-scale analysis workflow in R. VisRden can divide large-scale image processing tasks and conquer 3D reconstruction tasks with SGE (Sun Grid Engine) array jobs and R. Image-based operations and result aggregations are scheduled as array jobs in a parallel means to accelerate the knowledge discovery process. All these combine to provide a new analytics workflow for performing similar large-scale analysis loops where expert users only need to focus on the Divide-and-Conquer tasks with the domain knowledge.

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
3
Average
Average
Average
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