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Article . 2011
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Cold Spring Harbor Protocols
Article . 2011 . Peer-reviewed
Data sources: Crossref
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From IMGT-ONTOLOGY DESCRIPTION Axiom to IMGT Standardized Labels: For Immunoglobulin (IG) and T Cell Receptor (TR) Sequences and Structures

Authors: Lefranc, Mp;

From IMGT-ONTOLOGY DESCRIPTION Axiom to IMGT Standardized Labels: For Immunoglobulin (IG) and T Cell Receptor (TR) Sequences and Structures

Abstract

INTRODUCTIONMore than 560 IMGT standardized labels have been defined for the description of immunoglobulin (IG) and T cell receptor (TR) sequences and structures. These labels, as detailed here, are based on the concepts of description (generated from the DESCRIPTION axiom) of IMGT-ONTOLOGY, the global reference in immunogenetics and immunoinformatics, built by IMGT, the international ImMunoGeneTics information system. IMGT labels for nucleotide sequences correspond to the “Molecule_EntityPrototype” concept with its leafconcepts (a leafconcept is the finest level of granularity), its associated concepts of description, and its prototypes or graphical representations. These labels have been essential for the IG and TR description in the IMGT sequence and gene databases (IMGT/LIGM-DB, IMGT/GENE-DB) and tools (IMGT/V-QUEST, IMGT/JunctionAnalysis, IMGT/HighV-QUEST, IMGT/LIGMotif). IMGT labels for amino acid sequences and structures correspond to the “RECEPTOR,” “CHAIN,” and “DOMAIN” concepts. These labels have been crucial for the IG and TR description in the IMGT two-dimensional (2D) and three-dimensional (3D) databases (IMGT/2Dstructure-DB, IMGT/3Dstructure-DB) and tools (IMGT/DomainDisplay, IMGT/DomainGapAlign). As all leafconcepts of description are directly translated into IMGT standardized labels for use in the IMGT databases and tools, IMGT-ONTOLOGY concepts of description contribute to data coherence and consistency and facilitate the interoperability between the different components of IMGT, bridging the description of sequences and structures.

Keywords

Biological Products, [SDV.BIBS] Life Sciences [q-bio]/Quantitative Methods [q-bio.QM], Receptors, Antigen, T-Cell, Immunoglobulins, [SDV.GEN] Life Sciences [q-bio]/Genetics, Histocompatibility Antigens, Terminology as Topic, Immunogenetics, Animals, Humans, [INFO.INFO-BI] Computer Science [cs]/Bioinformatics [q-bio.QM], Information Systems

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
32
Top 10%
Top 10%
Top 10%
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