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https://doi.org/10.1101/475640...
Article . 2018 . Peer-reviewed
Data sources: Crossref
https://dx.doi.org/10.48550/ar...
Article . 2018
License: arXiv Non-Exclusive Distribution
Data sources: Datacite
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Multi-level Approximate Bayesian Computation

Authors: Lester, Christopher;

Multi-level Approximate Bayesian Computation

Abstract

Approximate Bayesian Computation is widely used to infer the parameters of discrete-state continuous-time Markov networks. In this work, we focus on models that are governed by the Chemical Master Equation (the CME). Whilst originally designed to model biochemical reactions, CME-based models are now frequently used to describe a wide range of biological phenomena mathematically. We describe and implement an efficient multi-level ABC method for investigating model parameters. In short, we generate sample paths of CME-based models with varying time resolutions. We start by generating low-resolution sample paths, which require only limited computational resources to construct. Those sample paths that compare well with experimental data are selected, and the temporal resolutions of the chosen sample paths are recursively increased. Those sample paths unlikely to aid in parameter inference are discarded at an early stage, leading to an optimal use of computational resources. The efficacy of the multi-level ABC is demonstrated through two case studies.

Keywords

FOS: Biological sciences, Quantitative Biology - Quantitative Methods, Quantitative Methods (q-bio.QM)

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average
Green