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Translating ceRNA susceptibilities into correlation functions

Authors: Martirosyan, A.; Marsili, M.; De Martino, A.;

Translating ceRNA susceptibilities into correlation functions

Abstract

Competition to bind microRNAs induces an effective positive crosstalk between their targets, therefore known as ‘competing endogenous RNAs’ or ceRNAs. While such an effect is known to play a significant role in specific situations, estimating its strength from data and, experimentally, in physiological conditions appears to be far from simple. Here we show that the susceptibility of ceRNAs to different types of perturbations affecting their competitors (and hence their tendency to crosstalk) can be encoded in quantities as intuitive and as simple to measure as correlation functions. We confirm this scenario by extensive numerical simulations and validate it by re-analyzing PTEN’s crosstalk pattern from TCGA breast cancer database. These results clarify the links between different quantities used to estimate the intensity of ceRNA crosstalk and provide new keys to analyze transcriptional datasets and effectively probe ceRNA networksin silico.

Country
Italy
Keywords

Models, Molecular, Transcription, Genetic, Molecular Networks (q-bio.MN), FOS: Physical sciences, Breast Neoplasms, Quantitative Biology - Quantitative Methods, Binding, Competitive, Models, Biological, Tensins, Databases, Genetic, Humans, Quantitative Biology - Molecular Networks, Computer Simulation, Quantitative Methods (q-bio.QM), Stochastic Processes, microRNA, Gene Expression Profiling, Nuclear Proteins, RNA-Binding Proteins, Disordered Systems and Neural Networks (cond-mat.dis-nn), Condensed Matter - Disordered Systems and Neural Networks, DNA-Binding Proteins, Kinetics, MicroRNAs, FOS: Biological sciences, Algorithms

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    selected citations
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    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    7
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Average
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
7
Average
Average
Top 10%
Green
hybrid
Funded by
Related to Research communities
Cancer Research