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Nucleic Acids Research
Article . 2024 . Peer-reviewed
License: CC BY NC
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Article . 2024
License: CC BY NC
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A phage nucleus-associated RNA-binding protein is required for jumbo phage infection

Authors: Eray Enustun; Emily G Armbruster; Jina Lee; Sitao Zhang; Brian A Yee; Kseniya Malukhina; Yajie Gu; +14 Authors

A phage nucleus-associated RNA-binding protein is required for jumbo phage infection

Abstract

Abstract Large-genome bacteriophages (jumbo phages) of the proposed family Chimalliviridae assemble a nucleus-like compartment bounded by a protein shell that protects the replicating phage genome from host-encoded restriction enzymes and DNA-targeting CRISPR-Cas nucleases. While the nuclear shell provides broad protection against host nucleases, it necessitates transport of mRNA out of the nucleus-like compartment for translation by host ribosomes, and transport of specific proteins into the nucleus-like compartment to support DNA replication and mRNA transcription. Here, we identify a conserved phage nuclear shell-associated protein that we term Chimallin C (ChmC), which adopts a nucleic acid-binding fold, binds RNA with high affinity in vitro, and binds phage mRNAs in infected cells. ChmC also forms phase-separated condensates with RNA in vitro. Targeted knockdown of ChmC using mRNA-targeting dCas13d results in accumulation of phage-encoded mRNAs in the phage nucleus, reduces phage protein production, and compromises virion assembly. Taken together, our data show that the conserved ChmC protein plays crucial roles in the viral life cycle, potentially by facilitating phage mRNA translocation through the nuclear shell to promote protein production and virion development.

Country
United States
Keywords

570, 1.1 Normal biological development and functioning, Messenger, 610, Genome, Viral, Viral Proteins, Information and Computing Sciences, Genetics, 2.2 Factors relating to the physical environment, 2.1 Biological and endogenous factors, Bacteriophages, Viral, RNA, Messenger, Molecular Biology, Cell Nucleus, Genome, Virus Assembly, RNA-Binding Proteins, Biological Sciences, Environmental sciences, Biological sciences, Infectious Diseases, Chemical sciences, RNA, RNA, Viral, Biochemistry and Cell Biology, Generic health relevance, CRISPR-Cas Systems, Infection, Environmental Sciences, Developmental Biology

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
22
Top 10%
Average
Top 10%
Green
gold