Galaxy HiCExplorer 3: a web server for reproducible Hi-C, capture Hi-C and single-cell Hi-C data analysis, quality control and visualization
Copyright policy )Galaxy HiCExplorer 3: a web server for reproducible Hi-C, capture Hi-C and single-cell Hi-C data analysis, quality control and visualization
AbstractThe Galaxy HiCExplorer provides a web service at https://hicexplorer.usegalaxy.eu. It enables the integrative analysis of chromosome conformation by providing tools and computational resources to pre-process, analyse and visualize Hi-C, Capture Hi-C (cHi-C) and single-cell Hi-C (scHi-C) data. Since the last publication, Galaxy HiCExplorer has been expanded considerably with new tools to facilitate the analysis of cHi-C and to provide an in-depth analysis of Hi-C data. Moreover, it supports the analysis of scHi-C data by offering a broad range of tools. With the help of the standard graphical user interface of Galaxy, presented workflows, extensive documentation and tutorials, novices as well as Hi-C experts are supported in their Hi-C data analysis with Galaxy HiCExplorer.
- Max Planck Institute of Immunobiology and Epigenetics / Tim Lämmermann Germany
- UNIVERSITÉ DE RENNES (EPE) France
- Département Sciences sociales, agriculture et alimentation, espace et environnement France
- UNIVERSITE DE RENNES France
- National Research Institute for Agriculture, Food and Environment France
Internet, [SDV.BIBS] Life Sciences [q-bio]/Quantitative Methods [q-bio.QM], 000, Molecular Conformation, 610, Reproducibility of Results, [SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM], Chromatin, Genetic Techniques, Web Server Issue, Computer Graphics, Single-Cell Analysis, Software
Internet, [SDV.BIBS] Life Sciences [q-bio]/Quantitative Methods [q-bio.QM], 000, Molecular Conformation, 610, Reproducibility of Results, [SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM], Chromatin, Genetic Techniques, Web Server Issue, Computer Graphics, Single-Cell Analysis, Software
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